Planaria EST Database

DrC_00737

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00737
         (501 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8JGS9|RS18_BRARE  40S ribosomal protein S18                   223   2e-58
sp|Q90YQ5|RS18_ICTPU  40S ribosomal protein S18                   221   6e-58
sp|P62272|RS18_PIG  40S ribosomal protein S18 >gi|54039385|s...   221   1e-57
sp|Q8IT98|RS18_AEQIR  40S ribosomal protein S18                   220   2e-57
sp|Q8ISP0|RS18_BRABE  40S ribosomal protein S18                   216   2e-56
sp|Q962R1|RS18_SPOFR  40S ribosomal protein S18                   204   1e-52
sp|P41094|RS18_DROME  40S ribosomal protein S18                   194   8e-50
sp|P34788|RS18_ARATH  40S ribosomal protein S18                   193   2e-49
sp|O94754|RS18_SCHPO  40S ribosomal protein S18                   190   2e-48
sp|P35271|RS18_YEAST  40S ribosomal protein S18                   188   7e-48

>sp|Q8JGS9|RS18_BRARE 40S ribosomal protein S18
          Length = 152

 Score =  223 bits (568), Expect = 2e-58
 Identities = 99/135 (73%), Positives = 122/135 (90%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL++P+KF HILRV+NTNIDG+R I +A+TAI+GVGRR+AHVV RKA++D+NKRAGE+T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
           EDE+E++ T+M NP  YKIP WFLNRQ+D+KDG  SQ++ANGLDNKLREDL+RLKKI+ H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135

>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18
          Length = 152

 Score =  221 bits (564), Expect = 6e-58
 Identities = 99/135 (73%), Positives = 122/135 (90%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL++P+KF HILRV+NTNIDG+R I +A+TAI+GVGRR+AHVV RKA++D++KRAGE+T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
           EDE+E++ T+M NP  YKIP WFLNRQ+DVKDG  SQ++ANGLDNKLREDL+RLKKI+ H
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135

>sp|P62272|RS18_PIG 40S ribosomal protein S18
 sp|P62270|RS18_MOUSE 40S ribosomal protein S18 (Ke-3) (Ke3)
 sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18
 sp|P62269|RS18_HUMAN 40S ribosomal protein S18 (Ke-3) (Ke3)
 sp|P62271|RS18_RAT 40S ribosomal protein S18
          Length = 152

 Score =  221 bits (562), Expect = 1e-57
 Identities = 99/135 (73%), Positives = 121/135 (89%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL++P+KF HILRV+NTNIDG+R I +A+TAI+GVGRR+AHVV RKA++D+ KRAGE+T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
           EDE+E++ T+M NP  YKIP WFLNRQ+DVKDG  SQ++ANGLDNKLREDL+RLKKI+ H
Sbjct: 61  EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135

>sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18
          Length = 152

 Score =  220 bits (560), Expect = 2e-57
 Identities = 98/135 (72%), Positives = 124/135 (91%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           M+LI+P+KF HILRVMNTNIDG+R I++A+TAI+G+GRR+A+VVC+KA+VDI KRAGE++
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
           EDE+E++ T+M+NP  YKIP WFLNRQ+DVKDG  SQ+M+N LDNKLREDL+RLKKI+ H
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135

>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18
          Length = 152

 Score =  216 bits (550), Expect = 2e-56
 Identities = 94/135 (69%), Positives = 124/135 (91%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL++P+KF HILRVMNTNIDG+R I++ALT+I+GVGRR++++VC+KA++D++KRAGE++
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
           ++E+E++ T+M NP  YKIP WFLNRQ+DVKDG  SQ+MAN LDNKLREDL+RLKKI+ H
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135

>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18
          Length = 152

 Score =  204 bits (519), Expect = 1e-52
 Identities = 88/135 (65%), Positives = 120/135 (88%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL++P KF HILR+MNTNIDG+R +++A+TAI+GVGRR++++V +KA++D++KRAGE T
Sbjct: 1   MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
           E+E+EKI T+M+NP  YKIP WFLNRQ+D+ DG  SQ+ ++ LD+KLREDL+RLKKI+ H
Sbjct: 61  EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RG+RH+WGLRVRGQH
Sbjct: 121 RGMRHYWGLRVRGQH 135

>sp|P41094|RS18_DROME 40S ribosomal protein S18
          Length = 152

 Score =  194 bits (494), Expect = 8e-50
 Identities = 84/135 (62%), Positives = 117/135 (86%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL++P+KF HILR+MNTNIDG+R +  A+TAI+GVGRR++++V +KA+VD+ KRAGE T
Sbjct: 1   MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
           E+E++K+ T+++NP  YK+P WFLNRQ+D+ DG   Q+ ++ LD+KLR+DL+RLKKI+ H
Sbjct: 61  EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135

>sp|P34788|RS18_ARATH 40S ribosomal protein S18
          Length = 152

 Score =  193 bits (491), Expect = 2e-49
 Identities = 84/135 (62%), Positives = 117/135 (86%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL+  ++F HILRV+NTN+DG++ I++ALT+I+G+GRR A++VC+KA+VD+NKRAGE++
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
             E++ + T++ANP  +KIP WFLNRQ+D KDG  SQ+++N LD KLR+DL+RLKKI+ H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135

>sp|O94754|RS18_SCHPO 40S ribosomal protein S18
          Length = 152

 Score =  190 bits (482), Expect = 2e-48
 Identities = 82/135 (60%), Positives = 116/135 (85%)
 Frame = +3

Query: 3   MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
           MSL++P  F HILR++NTN+DG+  +++A+T I+GVGRR+A++VC+KA++D++KRAGE+T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
            +ELE+I T++ NP+ +KIP WFLNRQ+D+ DG S Q++AN +D+KLREDL+RLKKI+ H
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120

Query: 363 RGLRHHWGLRVRGQH 407
           RGLRH   LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135

>sp|P35271|RS18_YEAST 40S ribosomal protein S18
          Length = 146

 Score =  188 bits (477), Expect = 7e-48
 Identities = 84/137 (61%), Positives = 114/137 (83%), Gaps = 2/137 (1%)
 Frame = +3

Query: 3   MSLIMPQK--FNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGE 176
           MSL++ ++  F HILR++NTN+DG   IVYALT I+GVGRR++++VC+KA+VD++KRAGE
Sbjct: 1   MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGE 60

Query: 177 ITEDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIK 356
           +T++ELE+I  +M NPT YKIP WFLNRQ D+ DG     +AN +++KLR+DL+RLKKI+
Sbjct: 61  LTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIR 120

Query: 357 CHRGLRHHWGLRVRGQH 407
            HRG+RH WGLRVRGQH
Sbjct: 121 AHRGIRHFWGLRVRGQH 137

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,449,190
Number of Sequences: 369166
Number of extensions: 832443
Number of successful extensions: 2429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00737

  1. Dr_sW_019_D03
  2. Dr_sW_003_O18
  3. Dr_sW_014_K13