Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_O18
(419 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8JGS9|RS18_BRARE 40S ribosomal protein S18 182 2e-46
sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 181 7e-46
sp|P62272|RS18_PIG 40S ribosomal protein S18 >gi|54039385|s... 180 1e-45
sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18 178 4e-45
sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 174 9e-44
sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 163 1e-40
sp|P35271|RS18_YEAST 40S ribosomal protein S18 160 1e-39
sp|P34788|RS18_ARATH 40S ribosomal protein S18 160 1e-39
sp|O94754|RS18_SCHPO 40S ribosomal protein S18 156 1e-38
sp|P41094|RS18_DROME 40S ribosomal protein S18 155 4e-38
>sp|Q8JGS9|RS18_BRARE 40S ribosomal protein S18
Length = 152
Score = 182 bits (462), Expect = 2e-46
Identities = 80/108 (74%), Positives = 98/108 (90%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+A+TAI+GVGRR+AHVV RKA++D+NKRAGE+TEDE+E++ T+M NP YKIP WFLNRQ
Sbjct: 28 FAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+D+KDG SQ++ANGLDNKLREDL+RLKKI+ HRGLRH WGLRVRGQH
Sbjct: 88 KDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18
Length = 152
Score = 181 bits (458), Expect = 7e-46
Identities = 80/108 (74%), Positives = 98/108 (90%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+A+TAI+GVGRR+AHVV RKA++D++KRAGE+TEDE+E++ T+M NP YKIP WFLNRQ
Sbjct: 28 FAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+DVKDG SQ++ANGLDNKLREDL+RLKKI+ HRGLRH WGLRVRGQH
Sbjct: 88 KDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>sp|P62272|RS18_PIG 40S ribosomal protein S18
sp|P62270|RS18_MOUSE 40S ribosomal protein S18 (Ke-3) (Ke3)
sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18
sp|P62269|RS18_HUMAN 40S ribosomal protein S18 (Ke-3) (Ke3)
sp|P62271|RS18_RAT 40S ribosomal protein S18
Length = 152
Score = 180 bits (456), Expect = 1e-45
Identities = 80/108 (74%), Positives = 97/108 (89%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+A+TAI+GVGRR+AHVV RKA++D+ KRAGE+TEDE+E++ T+M NP YKIP WFLNRQ
Sbjct: 28 FAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+DVKDG SQ++ANGLDNKLREDL+RLKKI+ HRGLRH WGLRVRGQH
Sbjct: 88 KDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18
Length = 152
Score = 178 bits (452), Expect = 4e-45
Identities = 78/108 (72%), Positives = 99/108 (91%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+A+TAI+G+GRR+A+VVC+KA+VDI KRAGE++EDE+E++ T+M+NP YKIP WFLNRQ
Sbjct: 28 FAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+DVKDG SQ+M+N LDNKLREDL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 88 KDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135
>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18
Length = 152
Score = 174 bits (440), Expect = 9e-44
Identities = 74/108 (68%), Positives = 99/108 (91%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+ALT+I+GVGRR++++VC+KA++D++KRAGE++++E+E++ T+M NP YKIP WFLNRQ
Sbjct: 28 FALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+DVKDG SQ+MAN LDNKLREDL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 88 KDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135
>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18
Length = 152
Score = 163 bits (413), Expect = 1e-40
Identities = 70/108 (64%), Positives = 96/108 (88%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+A+TAI+GVGRR++++V +KA++D++KRAGE TE+E+EKI T+M+NP YKIP WFLNRQ
Sbjct: 28 FAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+D+ DG SQ+ ++ LD+KLREDL+RLKKI+ HRG+RH+WGLRVRGQH
Sbjct: 88 KDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 135
>sp|P35271|RS18_YEAST 40S ribosomal protein S18
Length = 146
Score = 160 bits (405), Expect = 1e-39
Identities = 69/108 (63%), Positives = 92/108 (85%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
YALT I+GVGRR++++VC+KA+VD++KRAGE+T++ELE+I +M NPT YKIP WFLNRQ
Sbjct: 30 YALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQ 89
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
D+ DG +AN +++KLR+DL+RLKKI+ HRG+RH WGLRVRGQH
Sbjct: 90 NDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137
>sp|P34788|RS18_ARATH 40S ribosomal protein S18
Length = 152
Score = 160 bits (404), Expect = 1e-39
Identities = 69/108 (63%), Positives = 94/108 (87%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+ALT+I+G+GRR A++VC+KA+VD+NKRAGE++ E++ + T++ANP +KIP WFLNRQ
Sbjct: 28 FALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+D KDG SQ+++N LD KLR+DL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 88 KDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>sp|O94754|RS18_SCHPO 40S ribosomal protein S18
Length = 152
Score = 156 bits (395), Expect = 1e-38
Identities = 68/108 (62%), Positives = 94/108 (87%)
Frame = +2
Query: 2 YALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQ 181
+A+T I+GVGRR+A++VC+KA++D++KRAGE+T +ELE+I T++ NP+ +KIP WFLNRQ
Sbjct: 28 FAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQ 87
Query: 182 RDVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
+D+ DG S Q++AN +D+KLREDL+RLKKI+ HRGLRH LRVRGQH
Sbjct: 88 KDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRVRGQH 135
>sp|P41094|RS18_DROME 40S ribosomal protein S18
Length = 152
Score = 155 bits (391), Expect = 4e-38
Identities = 66/107 (61%), Positives = 93/107 (86%)
Frame = +2
Query: 5 ALTAIRGVGRRFAHVVCRKAEVDINKRAGEITEDELEKITTVMANPTVYKIPQWFLNRQR 184
A+TAI+GVGRR++++V +KA+VD+ KRAGE TE+E++K+ T+++NP YK+P WFLNRQ+
Sbjct: 29 AMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQK 88
Query: 185 DVKDGTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 325
D+ DG Q+ ++ LD+KLR+DL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 89 DIIDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,284,839
Number of Sequences: 369166
Number of extensions: 645536
Number of successful extensions: 1998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)