Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_K13
(224 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62272|RS18_PIG 40S ribosomal protein S18 >gi|54039385|s... 79 2e-15
sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 79 2e-15
sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 79 2e-15
sp|Q8JGS9|RS18_BRARE 40S ribosomal protein S18 79 2e-15
sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18 78 5e-15
sp|P34788|RS18_ARATH 40S ribosomal protein S18 71 7e-13
sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 71 9e-13
sp|P41094|RS18_DROME 40S ribosomal protein S18 67 1e-11
sp|P35271|RS18_YEAST 40S ribosomal protein S18 65 4e-11
sp|P48151|RS18_ENTHI 40S ribosomal protein S18 65 5e-11
>sp|P62272|RS18_PIG 40S ribosomal protein S18
sp|P62270|RS18_MOUSE 40S ribosomal protein S18 (Ke-3) (Ke3)
sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18
sp|P62269|RS18_HUMAN 40S ribosomal protein S18 (Ke-3) (Ke3)
sp|P62271|RS18_RAT 40S ribosomal protein S18
Length = 152
Score = 79.3 bits (194), Expect = 2e-15
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ++ANGLDNKLREDL+RLKKI+ HRGLRH WGLRVRGQH
Sbjct: 93 GKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18
Length = 152
Score = 79.3 bits (194), Expect = 2e-15
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ+MAN LDNKLREDL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 93 GKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135
>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18
Length = 152
Score = 79.3 bits (194), Expect = 2e-15
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ++ANGLDNKLREDL+RLKKI+ HRGLRH WGLRVRGQH
Sbjct: 93 GKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>sp|Q8JGS9|RS18_BRARE 40S ribosomal protein S18
Length = 152
Score = 79.3 bits (194), Expect = 2e-15
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ++ANGLDNKLREDL+RLKKI+ HRGLRH WGLRVRGQH
Sbjct: 93 GKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135
>sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18
Length = 152
Score = 78.2 bits (191), Expect = 5e-15
Identities = 34/43 (79%), Positives = 39/43 (90%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ+M+N LDNKLREDL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 93 GKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135
>sp|P34788|RS18_ARATH 40S ribosomal protein S18
Length = 152
Score = 71.2 bits (173), Expect = 7e-13
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ+++N LD KLR+DL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 93 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 135
>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18
Length = 152
Score = 70.9 bits (172), Expect = 9e-13
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ+ ++ LD+KLREDL+RLKKI+ HRG+RH+WGLRVRGQH
Sbjct: 93 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 135
>sp|P41094|RS18_DROME 40S ribosomal protein S18
Length = 152
Score = 67.4 bits (163), Expect = 1e-11
Identities = 28/39 (71%), Positives = 36/39 (92%)
Frame = +2
Query: 14 QIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
Q+ ++ LD+KLR+DL+RLKKI+ HRGLRH+WGLRVRGQH
Sbjct: 97 QLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQH 135
>sp|P35271|RS18_YEAST 40S ribosomal protein S18
Length = 146
Score = 65.5 bits (158), Expect = 4e-11
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G +AN +++KLR+DL+RLKKI+ HRG+RH WGLRVRGQH
Sbjct: 95 GKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQH 137
>sp|P48151|RS18_ENTHI 40S ribosomal protein S18
Length = 155
Score = 65.1 bits (157), Expect = 5e-11
Identities = 26/43 (60%), Positives = 37/43 (86%)
Frame = +2
Query: 2 GTSSQIMANGLDNKLREDLDRLKKIKCHRGLRHHWGLRVRGQH 130
G SQ++AN ++ +LRED++ LKK++ HRGLRH+WGLRVRGQ+
Sbjct: 94 GKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQN 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,234,789
Number of Sequences: 369166
Number of extensions: 285271
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)