Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D03
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8JGS9|RS18_BRARE 40S ribosomal protein S18 223 2e-58
sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 221 6e-58
sp|P62272|RS18_PIG 40S ribosomal protein S18 >gi|54039385|s... 221 1e-57
sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18 220 2e-57
sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 216 2e-56
sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 204 1e-52
sp|P41094|RS18_DROME 40S ribosomal protein S18 194 8e-50
sp|P34788|RS18_ARATH 40S ribosomal protein S18 193 2e-49
sp|O94754|RS18_SCHPO 40S ribosomal protein S18 190 2e-48
sp|P35271|RS18_YEAST 40S ribosomal protein S18 188 7e-48
>sp|Q8JGS9|RS18_BRARE 40S ribosomal protein S18
Length = 152
Score = 223 bits (568), Expect = 2e-58
Identities = 99/135 (73%), Positives = 122/135 (90%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL++P+KF HILRV+NTNIDG+R I +A+TAI+GVGRR+AHVV RKA++D+NKRAGE+T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
EDE+E++ T+M NP YKIP WFLNRQ+D+KDG SQ++ANGLDNKLREDL+RLKKI+ H
Sbjct: 61 EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18
Length = 152
Score = 221 bits (564), Expect = 6e-58
Identities = 99/135 (73%), Positives = 122/135 (90%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL++P+KF HILRV+NTNIDG+R I +A+TAI+GVGRR+AHVV RKA++D++KRAGE+T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
EDE+E++ T+M NP YKIP WFLNRQ+DVKDG SQ++ANGLDNKLREDL+RLKKI+ H
Sbjct: 61 EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>sp|P62272|RS18_PIG 40S ribosomal protein S18
sp|P62270|RS18_MOUSE 40S ribosomal protein S18 (Ke-3) (Ke3)
sp|Q5TJE9|RS18_CANFA 40S ribosomal protein S18
sp|P62269|RS18_HUMAN 40S ribosomal protein S18 (Ke-3) (Ke3)
sp|P62271|RS18_RAT 40S ribosomal protein S18
Length = 152
Score = 221 bits (562), Expect = 1e-57
Identities = 99/135 (73%), Positives = 121/135 (89%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL++P+KF HILRV+NTNIDG+R I +A+TAI+GVGRR+AHVV RKA++D+ KRAGE+T
Sbjct: 1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELT 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
EDE+E++ T+M NP YKIP WFLNRQ+DVKDG SQ++ANGLDNKLREDL+RLKKI+ H
Sbjct: 61 EDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH WGLRVRGQH
Sbjct: 121 RGLRHFWGLRVRGQH 135
>sp|Q8IT98|RS18_AEQIR 40S ribosomal protein S18
Length = 152
Score = 220 bits (560), Expect = 2e-57
Identities = 98/135 (72%), Positives = 124/135 (91%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
M+LI+P+KF HILRVMNTNIDG+R I++A+TAI+G+GRR+A+VVC+KA+VDI KRAGE++
Sbjct: 1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
EDE+E++ T+M+NP YKIP WFLNRQ+DVKDG SQ+M+N LDNKLREDL+RLKKI+ H
Sbjct: 61 EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18
Length = 152
Score = 216 bits (550), Expect = 2e-56
Identities = 94/135 (69%), Positives = 124/135 (91%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL++P+KF HILRVMNTNIDG+R I++ALT+I+GVGRR++++VC+KA++D++KRAGE++
Sbjct: 1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
++E+E++ T+M NP YKIP WFLNRQ+DVKDG SQ+MAN LDNKLREDL+RLKKI+ H
Sbjct: 61 DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18
Length = 152
Score = 204 bits (519), Expect = 1e-52
Identities = 88/135 (65%), Positives = 120/135 (88%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL++P KF HILR+MNTNIDG+R +++A+TAI+GVGRR++++V +KA++D++KRAGE T
Sbjct: 1 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
E+E+EKI T+M+NP YKIP WFLNRQ+D+ DG SQ+ ++ LD+KLREDL+RLKKI+ H
Sbjct: 61 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 120
Query: 363 RGLRHHWGLRVRGQH 407
RG+RH+WGLRVRGQH
Sbjct: 121 RGMRHYWGLRVRGQH 135
>sp|P41094|RS18_DROME 40S ribosomal protein S18
Length = 152
Score = 194 bits (494), Expect = 8e-50
Identities = 84/135 (62%), Positives = 117/135 (86%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL++P+KF HILR+MNTNIDG+R + A+TAI+GVGRR++++V +KA+VD+ KRAGE T
Sbjct: 1 MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECT 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
E+E++K+ T+++NP YK+P WFLNRQ+D+ DG Q+ ++ LD+KLR+DL+RLKKI+ H
Sbjct: 61 EEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTSSNLDSKLRDDLERLKKIRSH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>sp|P34788|RS18_ARATH 40S ribosomal protein S18
Length = 152
Score = 193 bits (491), Expect = 2e-49
Identities = 84/135 (62%), Positives = 117/135 (86%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL+ ++F HILRV+NTN+DG++ I++ALT+I+G+GRR A++VC+KA+VD+NKRAGE++
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
E++ + T++ANP +KIP WFLNRQ+D KDG SQ+++N LD KLR+DL+RLKKI+ H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH+WGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135
>sp|O94754|RS18_SCHPO 40S ribosomal protein S18
Length = 152
Score = 190 bits (482), Expect = 2e-48
Identities = 82/135 (60%), Positives = 116/135 (85%)
Frame = +3
Query: 3 MSLIMPQKFNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGEIT 182
MSL++P F HILR++NTN+DG+ +++A+T I+GVGRR+A++VC+KA++D++KRAGE+T
Sbjct: 1 MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60
Query: 183 EDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIKCH 362
+ELE+I T++ NP+ +KIP WFLNRQ+D+ DG S Q++AN +D+KLREDL+RLKKI+ H
Sbjct: 61 TEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTH 120
Query: 363 RGLRHHWGLRVRGQH 407
RGLRH LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135
>sp|P35271|RS18_YEAST 40S ribosomal protein S18
Length = 146
Score = 188 bits (477), Expect = 7e-48
Identities = 84/137 (61%), Positives = 114/137 (83%), Gaps = 2/137 (1%)
Frame = +3
Query: 3 MSLIMPQK--FNHILRVMNTNIDGQRTIVYALTAIRGVGRRFAHVVCRKAEVDINKRAGE 176
MSL++ ++ F HILR++NTN+DG IVYALT I+GVGRR++++VC+KA+VD++KRAGE
Sbjct: 1 MSLVVQEQGSFQHILRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGE 60
Query: 177 ITEDELEKITTVMANPTVYKIPQWFLNRQRDVKDGTSSQIMANGLDNKLREDLDRLKKIK 356
+T++ELE+I +M NPT YKIP WFLNRQ D+ DG +AN +++KLR+DL+RLKKI+
Sbjct: 61 LTQEELERIVQIMQNPTHYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIR 120
Query: 357 CHRGLRHHWGLRVRGQH 407
HRG+RH WGLRVRGQH
Sbjct: 121 AHRGIRHFWGLRVRGQH 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,449,190
Number of Sequences: 369166
Number of extensions: 832443
Number of successful extensions: 2429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)