Planaria EST Database

DrC_00673

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00673
         (897 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05079|F16P_KLULA  Fructose-1,6-bisphosphatase (D-fructos...    31   5.4  
sp|Q9CPP7|LIPG_MOUSE  Gastric triacylglycerol lipase precurs...    30   7.0  
sp|P75177|DPO3X_MYCPN  DNA polymerase III subunit gamma/tau        30   7.0  
sp|P80035|LIPG_CANFA  Gastric triacylglycerol lipase precurs...    30   7.0  
sp|O75106|AOC2_HUMAN  Retina-specific copper amine oxidase p...    30   9.1  
sp|Q88P80|NDPA_PSEPK  Nucleoid-associated protein ndpA             30   9.1  

>sp|Q05079|F16P_KLULA Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate
           1-phosphohydrolase) (FBPase)
          Length = 355

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 337 MIPFRNSMGTCWTAGVPICGAGRLMKRSSAGKIVSHSIMNSRVHGHSNMENARITFYRIS 516
           +I FRNS G       PI G+  L    S G IVS   ++   +G+S  E++  T   ++
Sbjct: 112 LIVFRNSPGKYAVCCDPIDGSSNLDAGVSVGTIVSLFKIHENQNGNSGEEDSEGTINDVA 171

Query: 517 T--RRLILLCFSL 549
              R ++  C+++
Sbjct: 172 RCGREMVAACYTM 184

>sp|Q9CPP7|LIPG_MOUSE Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
          Length = 395

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 363 YVLDSGGADLWCGEINEEEFRRKNCFSFDHEQSSAWSFKHGEREDYILSDIDKTSDF 533
           ++L   G D+W G      + RKN + +  +    W+F   E   Y   D+  T DF
Sbjct: 103 FILADAGYDVWLGNSRGNTWSRKNVY-YSPDSVEFWAFSFDEMAKY---DLPATIDF 155

>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau
          Length = 681

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 501 ILSDIDKTSDFALFLVAVMENETMPIKCWKWSEIFKYHQLSGDKSESRMPTVVSLE 668
           +L  +++  D+ LF+ A  E   +PI      + F + Q++ D  + R+  V + E
Sbjct: 137 LLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQQRLAEVAAKE 192

>sp|P80035|LIPG_CANFA Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
          Length = 398

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 363 YVLDSGGADLWCGEINEEEFRRKNCFSFDHEQSSAWSFKHGEREDYILSDIDKTSDFAL 539
           ++L   G D+W G      + R+N + +  +    W+F   E   Y   D+  T DF L
Sbjct: 104 FILADAGYDVWLGNSRGNTWARRNLY-YSPDSVEFWAFSFDEMAKY---DLPATIDFIL 158

>sp|O75106|AOC2_HUMAN Retina-specific copper amine oxidase precursor (RAO) (Amine oxidase
           [copper-containing])
          Length = 756

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 405 SPRTTNRHPRCPARTHRIAEWNHSSGQTRAYPSCAKRDL 289
           SP  +++ P CP+ +HR   W H  GQ++ +   ++ +L
Sbjct: 27  SPGGSSQPPHCPSVSHRAQPWPH-PGQSQLFADLSREEL 64

>sp|Q88P80|NDPA_PSEPK Nucleoid-associated protein ndpA
          Length = 335

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 441 SFDHEQSSAWSFKHGEREDYILSD-----IDKTSDFALFLVAVMEN 563
           S++ +Q  AW F HGE   Y LS      +D+  DF  F    +E+
Sbjct: 45  SYNAKQGKAWGFFHGESGAYPLSGWLKQYLDEEKDFTAFSRVAVEH 90

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,693,275
Number of Sequences: 369166
Number of extensions: 2157892
Number of successful extensions: 5443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5442
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00673

  1. Dr_sW_017_K19
  2. Dr_sW_012_M08
  3. Dr_sW_025_N11
  4. Dr_sW_017_F14