Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_M08
(380 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z4W7|TRPE_STRCO Anthranilate synthase component I 29 3.8
sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC) 29 3.8
sp|Q9WIK0|REP7_FBNY1 Replication-associated protein 7 (Rep7) 28 6.5
>sp|Q9Z4W7|TRPE_STRCO Anthranilate synthase component I
Length = 511
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 170 PMETGTPPG*PQWAFLILICHRSAGDI*IF-HSISNILLASFHSP 39
P+ G PPG P+ AFL +A D+ +F H+ +LL + + P
Sbjct: 152 PLAAGPPPGLPESAFL------AADDLVVFDHATRRVLLMTLYRP 190
>sp|O13290|DYHC_SCHPO Dynein heavy chain, cytosolic (DYHC)
Length = 4196
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Frame = +2
Query: 8 SDFALFLVAVMENETMPIKCWK-----WSEIFK---------YHQLSGDKSESRMPTVVS 145
S+ F V+ N C K WS FK + ++ D+SESRMPT+V
Sbjct: 3851 SNIQNFCTEVLANTHCEEDCLKLLYDLWSSAFKVEFSNIKYDFLKIINDESESRMPTIVY 3910
Query: 146 LEE 154
L E
Sbjct: 3911 LME 3913
>sp|Q9WIK0|REP7_FBNY1 Replication-associated protein 7 (Rep7)
Length = 283
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 223 RCSNQKMAISCSWQFAYFPWKRELLQ 146
R +K+ SC+W F PW+ ELL+
Sbjct: 131 RVQMKKIRESCTWNFDLRPWQDELLK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,960,623
Number of Sequences: 369166
Number of extensions: 723314
Number of successful extensions: 1537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)