Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K19
(896 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05079|F16P_KLULA Fructose-1,6-bisphosphatase (D-fructos... 31 5.4
sp|Q9CPP7|LIPG_MOUSE Gastric triacylglycerol lipase precurs... 30 7.0
sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau 30 7.0
sp|P80035|LIPG_CANFA Gastric triacylglycerol lipase precurs... 30 7.0
sp|O75106|AOC2_HUMAN Retina-specific copper amine oxidase p... 30 9.1
sp|Q88P80|NDPA_PSEPK Nucleoid-associated protein ndpA 30 9.1
>sp|Q05079|F16P_KLULA Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate
1-phosphohydrolase) (FBPase)
Length = 355
Score = 30.8 bits (68), Expect = 5.4
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 337 MIPFRNSMGTCWTAGVPICGAGRLMKRSSAGKIVSHSIMNSRVHGHSNMENARITFYRIS 516
+I FRNS G PI G+ L S G IVS ++ +G+S E++ T ++
Sbjct: 112 LIVFRNSPGKYAVCCDPIDGSSNLDAGVSVGTIVSLFKIHENQNGNSGEEDSEGTINDVA 171
Query: 517 T--RRLILLCFSL 549
R ++ C+++
Sbjct: 172 RCGREMVAACYTM 184
>sp|Q9CPP7|LIPG_MOUSE Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
Length = 395
Score = 30.4 bits (67), Expect = 7.0
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 363 YVLDSGGADLWCGEINEEEFRRKNCFSFDHEQSSAWSFKHGEREDYILSDIDKTSDF 533
++L G D+W G + RKN + + + W+F E Y D+ T DF
Sbjct: 103 FILADAGYDVWLGNSRGNTWSRKNVY-YSPDSVEFWAFSFDEMAKY---DLPATIDF 155
>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau
Length = 681
Score = 30.4 bits (67), Expect = 7.0
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 501 ILSDIDKTSDFALFLVAVMENETMPIKCWKWSEIFKYHQLSGDKSESRMPTVVSLE 668
+L +++ D+ LF+ A E +PI + F + Q++ D + R+ V + E
Sbjct: 137 LLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQQRLAEVAAKE 192
>sp|P80035|LIPG_CANFA Gastric triacylglycerol lipase precursor (Gastric lipase) (GL)
Length = 398
Score = 30.4 bits (67), Expect = 7.0
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +3
Query: 363 YVLDSGGADLWCGEINEEEFRRKNCFSFDHEQSSAWSFKHGEREDYILSDIDKTSDFAL 539
++L G D+W G + R+N + + + W+F E Y D+ T DF L
Sbjct: 104 FILADAGYDVWLGNSRGNTWARRNLY-YSPDSVEFWAFSFDEMAKY---DLPATIDFIL 158
>sp|O75106|AOC2_HUMAN Retina-specific copper amine oxidase precursor (RAO) (Amine oxidase
[copper-containing])
Length = 756
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 405 SPRTTNRHPRCPARTHRIAEWNHSSGQTRAYPSCAKRDL 289
SP +++ P CP+ +HR W H GQ++ + ++ +L
Sbjct: 27 SPGGSSQPPHCPSVSHRAQPWPH-PGQSQLFADLSREEL 64
>sp|Q88P80|NDPA_PSEPK Nucleoid-associated protein ndpA
Length = 335
Score = 30.0 bits (66), Expect = 9.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +3
Query: 441 SFDHEQSSAWSFKHGEREDYILSD-----IDKTSDFALFLVAVMEN 563
S++ +Q AW F HGE Y LS +D+ DF F +E+
Sbjct: 45 SYNAKQGKAWGFFHGESGAYPLSGWLKQYLDEEKDFTAFSRVAVEH 90
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,969,754
Number of Sequences: 369166
Number of extensions: 2162463
Number of successful extensions: 5444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5443
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)