Planarian EST Database

DrC_00645

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00645 GATATAAAGGGTTATTTATTGCGTAATCTTTCTGTTAGTGATTCTGTTTATATTTGCGTT AATACTATAAATCGTTTTATTTGTAGTTCTAAGGATGTTATTCATAGTTTTTGTATTCCA GAATTTGGTGTTAAGGTTGATTGTATTGCCGGTCGTTTAAATACTGTAAATTCTTTACCT ATGTCGAGTGGTGTTTATTATGGCCAATGTTCTGAAGTTTGTGGTTTAAACCATTCTTAT ATGCCATTTGTTGTTACTGTTTTACCTGAGAATTCTTATTTAAATCTTTTTACTTCTATT TTATCCCCTTCTGATCCTATAGGTGAAGTTTCTGATAAGAAGTCTGGTTCTACAGTTGTA GGCCAATTTGGTGAAGTTAGTGGGAATCCCATTCCAGCTAATGATGTAACTCCTCCTGTT GGTGTTGTTATTCCTCCTTTTGGTGTTGTTGTTCCTCCTGTTGATGATAATGATGTGACA CCTCCTACTGATACTGATGATGTGACACCTCCTATTGTTATTGATGATGTAACACCTCCT ATTGATGAAGATGTGGTTTTACCTCCTATTGTTGTTGATGATGTAACACCTCCTATTGAT GAAGATGTGGTTTTACCTCCTATTGTTATTGATGATGTAACACCTCCTATTGATGAAGAT GTGGTTTTACCTCCTATTGTTATTGATGATGTAACACCTCCTATTGATGAAGATGTGGTT TTACCTCCTATTGTTATTGATGATGTAACACCTCCTATTGATGAAGATGTGGTTTTACCT CCTATTGTTATTGATGATGTAACACCTCCTATTGATGAAGATGTGGTTTTACCTCCTGTT GATGAAGATGTGGTTTTACCTCCTATTGCTATTGATGATGTAACACCCCCTGTGATGATA ATGGGGTAACACTTTCT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00645
         (917 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05490|COX2_OENBE  Cytochrome c oxidase subunit 2 (Cytoch...    96   2e-19
sp|P43372|COX2_BRENA  Cytochrome c oxidase subunit 2 (Cytoch...    94   5e-19
sp|Q37548|COX2_MACCA  Cytochrome c oxidase subunit 2 (Cytoch...    92   3e-18
sp|P43375|COX2_EENNA  Cytochrome c oxidase subunit 2 (Cytoch...    92   3e-18
sp|Q00528|COX2_PHOVI  Cytochrome c oxidase subunit 2 (Cytoch...    91   3e-18
sp|P38596|COX2_HALGR  Cytochrome c oxidase subunit 2 (Cytoch...    91   3e-18
sp|P29163|COX2_PNECA  Cytochrome c oxidase subunit 2 (Cytoch...    91   3e-18
sp|Q37596|COX2_PHYHA  Cytochrome c oxidase subunit 2 (Cytoch...    91   3e-18
sp|P98043|COX2_TARBA  Cytochrome c oxidase subunit 2 (Cytoch...    91   5e-18
sp|P98035|COX2_LEMCA  Cytochrome c oxidase subunit 2 (Cytoch...    91   6e-18

>sp|P05490|COX2_OENBE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 258

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 43/97 (44%), Positives = 60/97 (61%)
 Frame = +1

Query: 19  LRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVY 198
           LR L V + V + V T  R I +S DV+HS+ +P  GVK D + GRLN ++ L    GVY
Sbjct: 159 LRLLEVDNRVVVPVKTNLRLIVTSADVLHSWAVPSLGVKCDAVPGRLNQISMLVQREGVY 218

Query: 199 YGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSILSP 309
           YGQCSE+CG NH++MP V+  +    Y N  +++  P
Sbjct: 219 YGQCSEICGTNHAFMPIVIEAVSATDYTNWVSNLFIP 255

>sp|P43372|COX2_BRENA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 248

 Score = 94.0 bits (232), Expect = 5e-19
 Identities = 45/88 (51%), Positives = 57/88 (64%)
 Frame = +1

Query: 19  LRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVY 198
           LR L V  SV   V+T  RFI +S DVIH FC+P  G+K+D   GRLN  ++L    GVY
Sbjct: 155 LRMLDVDASVVCPVDTHIRFIVTSADVIHDFCMPSLGIKIDAAPGRLNQTSALIQREGVY 214

Query: 199 YGQCSEVCGLNHSYMPFVVTVLPENSYL 282
           YGQCSE+CG+ HS MP  + V+P   +L
Sbjct: 215 YGQCSELCGVMHSAMPIKIEVVPTADFL 242

>sp|Q37548|COX2_MACCA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 43/89 (48%), Positives = 58/89 (65%)
 Frame = +1

Query: 1   DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
           D+K   LR L V + V + V    R + SS+DV+HS+ +P  G+K D I GRLN    L 
Sbjct: 127 DLKPGELRLLEVDNRVVLPVEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLLS 186

Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLP 267
           +  G+YYGQCSE+CG NHS+MP V+ V+P
Sbjct: 187 IRPGLYYGQCSEICGSNHSFMPIVLEVVP 215

>sp|P43375|COX2_EENNA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 247

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 43/88 (48%), Positives = 56/88 (63%)
 Frame = +1

Query: 19  LRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVY 198
           LR L V  SV   V+T  RF+ +S DVIH FC+P  G+K+D   GRLN  ++L    GVY
Sbjct: 154 LRMLDVDASVVCPVDTHMRFMVTSADVIHDFCMPSLGIKIDAAPGRLNQTSALMQREGVY 213

Query: 199 YGQCSEVCGLNHSYMPFVVTVLPENSYL 282
           YGQCSE+CG+ HS MP  +  +P   +L
Sbjct: 214 YGQCSELCGVMHSSMPIKIEAVPTVDFL 241

>sp|Q00528|COX2_PHOVI Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 43/101 (42%), Positives = 64/101 (63%)
 Frame = +1

Query: 1   DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
           ++K   LR L V + V + +    R + SS+DV+HS+ +P  G+K D I GRLN    + 
Sbjct: 127 ELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMT 186

Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
           M  G+YYGQCSE+CG NHS+MP V+ ++P + +    TS+L
Sbjct: 187 MRPGLYYGQCSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227

>sp|P38596|COX2_HALGR Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 43/101 (42%), Positives = 64/101 (63%)
 Frame = +1

Query: 1   DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
           ++K   LR L V + V + +    R + SS+DV+HS+ +P  G+K D I GRLN    + 
Sbjct: 127 ELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMA 186

Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
           M  G+YYGQCSE+CG NHS+MP V+ ++P + +    TS+L
Sbjct: 187 MRPGLYYGQCSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227

>sp|P29163|COX2_PNECA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 243

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 43/95 (45%), Positives = 60/95 (63%)
 Frame = +1

Query: 1   DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
           D++   LR L V + V + VNT  RFI ++ DV+H F +P  G+KVD   GRLN V++  
Sbjct: 144 DLEEGQLRQLEVDNRVLVPVNTPLRFIITATDVLHDFAVPSLGIKVDASPGRLNQVSTYV 203

Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLN 285
              GVYYGQCSE+CG+ HS MP V+  +    +L+
Sbjct: 204 QREGVYYGQCSELCGVLHSSMPIVIEAVSLEKFLS 238

>sp|Q37596|COX2_PHYHA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 45/101 (44%), Positives = 62/101 (61%)
 Frame = +1

Query: 1   DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
           D+K   LR L V + V I +    R + SS+DV+HS+ +P  G+K D I GRLN    L 
Sbjct: 127 DLKSGGLRLLEVDNRVVIPMEMTVRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLLS 186

Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
              G+YYGQCSE+CG NHS+MP V+ ++  N +    TS+L
Sbjct: 187 TRPGLYYGQCSEICGSNHSFMPIVLEMVTLNCFEKWSTSML 227

>sp|P98043|COX2_TARBA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 90.9 bits (224), Expect = 5e-18
 Identities = 43/101 (42%), Positives = 63/101 (62%)
 Frame = +1

Query: 1   DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
           D+K   LR L V + V + +    R + SS+DV+HS+ +P  G+K D I GRLN    + 
Sbjct: 127 DLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLMS 186

Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
              G+YYGQCSE+CG NHS+MP V+ ++P   + N  TS++
Sbjct: 187 TRPGLYYGQCSEICGSNHSFMPIVLELVPLKHFENWSTSMI 227

>sp|P98035|COX2_LEMCA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 90.5 bits (223), Expect = 6e-18
 Identities = 44/101 (43%), Positives = 60/101 (59%)
 Frame = +1

Query: 1   DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
           D+K   LR L V + V +      R + SS+DV+HS+ +P  GVK D I GRLN    + 
Sbjct: 127 DLKPGELRLLEVDNRVVLPTELAVRMLISSEDVLHSWTVPSLGVKTDAIPGRLNQATLMA 186

Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
              GVYYGQCSE+CG NHS+MP V+ ++P   +     S+L
Sbjct: 187 SRPGVYYGQCSEICGANHSFMPIVLELVPLKHFEEWLLSML 227

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,571,343
Number of Sequences: 369166
Number of extensions: 914988
Number of successful extensions: 2686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00645

Planaria EST Database

DrC_00645

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail