Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_F05
(631 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15545|COX2_STRPU Cytochrome c oxidase subunit 2 (Cytoch... 54 4e-07
sp|O79673|COX2_PELSU Cytochrome c oxidase subunit 2 (Cytoch... 53 7e-07
sp|P00407|COX2_XENLA Cytochrome c oxidase subunit 2 (Cytoch... 52 1e-06
sp|P05490|COX2_OENBE Cytochrome c oxidase subunit 2 (Cytoch... 52 1e-06
sp|P50689|COX2_GEOCP Cytochrome c oxidase subunit 2 (Cytoch... 52 1e-06
sp|O03891|COX2_DRONO Cytochrome c oxidase subunit 2 (Cytoch... 52 1e-06
sp|P50666|COX2_CAIMO Cytochrome c oxidase subunit 2 (Cytoch... 52 1e-06
sp|Q00528|COX2_PHOVI Cytochrome c oxidase subunit 2 (Cytoch... 52 2e-06
sp|P38596|COX2_HALGR Cytochrome c oxidase subunit 2 (Cytoch... 52 2e-06
sp|P98043|COX2_TARBA Cytochrome c oxidase subunit 2 (Cytoch... 52 2e-06
>sp|P15545|COX2_STRPU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 229
Score = 53.5 bits (127), Expect = 4e-07
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 7 SGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 123
+GV+YGQCSE+CG NHS+MP V+ +P N++ N T L
Sbjct: 189 TGVFYGQCSEICGANHSFMPIVIESVPFNTFENWVTQYL 227
>sp|O79673|COX2_PELSU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 229
Score = 52.8 bits (125), Expect = 7e-07
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 1 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSY 99
M +G++YGQCSE+CG NHS+MP VV LP N +
Sbjct: 187 MQAGIFYGQCSEICGANHSFMPVVVESLPMNHF 219
>sp|P00407|COX2_XENLA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 229
Score = 52.0 bits (123), Expect = 1e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1
Query: 10 GVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 123
GV+YGQCSE+CG NHS+MP VV +P + N +S+L
Sbjct: 190 GVFYGQCSEICGANHSFMPIVVEAVPLTDFENWSSSML 227
>sp|P05490|COX2_OENBE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 258
Score = 52.0 bits (123), Expect = 1e-06
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 10 GVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSILSP 129
GVYYGQCSE+CG NH++MP V+ + Y N +++ P
Sbjct: 216 GVYYGQCSEICGTNHAFMPIVIEAVSATDYTNWVSNLFIP 255
>sp|P50689|COX2_GEOCP Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 52.0 bits (123), Expect = 1e-06
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = +1
Query: 10 GVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSI 120
G++YGQCSE+CG NHS+MP V+ ++P S+ N TS+
Sbjct: 190 GLFYGQCSEICGSNHSFMPIVIEMVPLKSFENWTTSM 226
>sp|O03891|COX2_DRONO Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 199
Score = 52.0 bits (123), Expect = 1e-06
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +1
Query: 10 GVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSILSPSDPI 141
G++YGQCSE+CG NHSYMP VV P + N ++S+LS S +
Sbjct: 157 GIFYGQCSEICGANHSYMPIVVESTPLTHFEN-WSSLLSASSSL 199
>sp|P50666|COX2_CAIMO Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 228
Score = 52.0 bits (123), Expect = 1e-06
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +1
Query: 10 GVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSILSPS 132
GV+YGQCSE+CG NHSYMP VV P Y ++S+LS S
Sbjct: 189 GVFYGQCSEICGANHSYMPIVVESTP-LPYFETWSSLLSAS 228
>sp|Q00528|COX2_PHOVI Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 51.6 bits (122), Expect = 2e-06
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1
Query: 1 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 123
M G+YYGQCSE+CG NHS+MP V+ ++P + + TS+L
Sbjct: 187 MRPGLYYGQCSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227
>sp|P38596|COX2_HALGR Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 51.6 bits (122), Expect = 2e-06
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1
Query: 1 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 123
M G+YYGQCSE+CG NHS+MP V+ ++P + + TS+L
Sbjct: 187 MRPGLYYGQCSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227
>sp|P98043|COX2_TARBA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 51.6 bits (122), Expect = 2e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = +1
Query: 10 GVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 123
G+YYGQCSE+CG NHS+MP V+ ++P + N TS++
Sbjct: 190 GLYYGQCSEICGSNHSFMPIVLELVPLKHFENWSTSMI 227
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,513,146
Number of Sequences: 369166
Number of extensions: 446262
Number of successful extensions: 1397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5023626210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)