Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_B21
(723 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05490|COX2_OENBE Cytochrome c oxidase subunit 2 (Cytoch... 93 6e-19
sp|P43372|COX2_BRENA Cytochrome c oxidase subunit 2 (Cytoch... 91 2e-18
sp|P43375|COX2_EENNA Cytochrome c oxidase subunit 2 (Cytoch... 89 1e-17
sp|Q00528|COX2_PHOVI Cytochrome c oxidase subunit 2 (Cytoch... 89 2e-17
sp|P38596|COX2_HALGR Cytochrome c oxidase subunit 2 (Cytoch... 89 2e-17
sp|P48870|COX2_CYACA Cytochrome c oxidase subunit 2 (Cytoch... 89 2e-17
sp|O99819|COX2_RHISA Cytochrome c oxidase subunit 2 (Cytoch... 89 2e-17
sp|P33505|COX2_ANOQU Cytochrome c oxidase subunit 2 (Cytoch... 88 2e-17
sp|P34840|COX2_ANOGA Cytochrome c oxidase subunit 2 (Cytoch... 88 2e-17
sp|P50689|COX2_GEOCP Cytochrome c oxidase subunit 2 (Cytoch... 88 3e-17
>sp|P05490|COX2_OENBE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 258
Score = 93.2 bits (230), Expect = 6e-19
Identities = 41/94 (43%), Positives = 58/94 (61%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V + V + V T R I +S DV+HS+ +P GVK D + GRLN ++ L GVYYGQ
Sbjct: 162 LEVDNRVVVPVKTNLRLIVTSADVLHSWAVPSLGVKCDAVPGRLNQISMLVQREGVYYGQ 221
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYLNLFTSILSP 287
CSE+CG NH++MP V+ + Y N +++ P
Sbjct: 222 CSEICGTNHAFMPIVIEAVSATDYTNWVSNLFIP 255
>sp|P43372|COX2_BRENA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 248
Score = 91.3 bits (225), Expect = 2e-18
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V SV V+T RFI +S DVIH FC+P G+K+D GRLN ++L GVYYGQ
Sbjct: 158 LDVDASVVCPVDTHIRFIVTSADVIHDFCMPSLGIKIDAAPGRLNQTSALIQREGVYYGQ 217
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYL 260
CSE+CG+ HS MP + V+P +L
Sbjct: 218 CSELCGVMHSAMPIKIEVVPTADFL 242
>sp|P43375|COX2_EENNA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 247
Score = 89.0 bits (219), Expect = 1e-17
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V SV V+T RF+ +S DVIH FC+P G+K+D GRLN ++L GVYYGQ
Sbjct: 157 LDVDASVVCPVDTHMRFMVTSADVIHDFCMPSLGIKIDAAPGRLNQTSALMQREGVYYGQ 216
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYL 260
CSE+CG+ HS MP + +P +L
Sbjct: 217 CSELCGVMHSSMPIKIEAVPTVDFL 241
>sp|Q00528|COX2_PHOVI Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 88.6 bits (218), Expect = 2e-17
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V + V + + R + SS+DV+HS+ +P G+K D I GRLN + M G+YYGQ
Sbjct: 136 LEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMTMRPGLYYGQ 195
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 281
CSE+CG NHS+MP V+ ++P + + TS+L
Sbjct: 196 CSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227
>sp|P38596|COX2_HALGR Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 88.6 bits (218), Expect = 2e-17
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V + V + + R + SS+DV+HS+ +P G+K D I GRLN + M G+YYGQ
Sbjct: 136 LEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMAMRPGLYYGQ 195
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 281
CSE+CG NHS+MP V+ ++P + + TS+L
Sbjct: 196 CSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227
>sp|P48870|COX2_CYACA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 255
Score = 88.6 bits (218), Expect = 2e-17
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V + + I VNT R I + DVIHS+ +P GVK D I GRLN ++ G+YYGQ
Sbjct: 162 LEVDNRIIIPVNTHIRIIVTGADVIHSWAVPSLGVKCDAIPGRLNQISFFIKREGIYYGQ 221
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYL 260
CSE+CG+NH +MP V+ + + Y+
Sbjct: 222 CSEICGVNHGFMPIVIEAVSFDDYI 246
>sp|O99819|COX2_RHISA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 225
Score = 88.6 bits (218), Expect = 2e-17
Identities = 39/90 (43%), Positives = 58/90 (64%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L +++ I +NT +++ SS DVIHS+ IP G+K+D + GRLN S+ G+YYGQ
Sbjct: 135 LDTDNNLVIPINTNIKYLISSMDVIHSWTIPSLGIKMDAVPGRLNQSFSISSRPGLYYGQ 194
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYLNLFTS 275
CSE+CG NHS+MP + V +++N S
Sbjct: 195 CSEICGANHSFMPISLGVTSMKNFINFINS 224
>sp|P33505|COX2_ANOQU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 228
Score = 88.2 bits (217), Expect = 2e-17
Identities = 39/91 (42%), Positives = 59/91 (64%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V + V + VN R + ++ DV+HS+ +P GVKVD GRLN +N L G+++GQ
Sbjct: 136 LDVDNRVVLPVNNQIRILVTATDVLHSWTVPSLGVKVDATPGRLNQLNFLINRPGLFFGQ 195
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYLNLFTSI 278
CSE+CG NHS+MP V+ +P N ++ T++
Sbjct: 196 CSEICGANHSFMPIVIESIPMNYFIKWITNM 226
>sp|P34840|COX2_ANOGA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 228
Score = 88.2 bits (217), Expect = 2e-17
Identities = 39/91 (42%), Positives = 59/91 (64%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V + V + +N R + ++ DV+HS+ +P GVKVD GRLN +N L G+++GQ
Sbjct: 136 LDVDNRVVLPMNNQIRILVTATDVLHSWTVPSLGVKVDATPGRLNQLNFLINRPGLFFGQ 195
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYLNLFTSI 278
CSE+CG NHS+MP V+ +P N ++ TS+
Sbjct: 196 CSEICGANHSFMPIVIESIPMNYFIKWITSM 226
>sp|P50689|COX2_GEOCP Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 87.8 bits (216), Expect = 3e-17
Identities = 40/91 (43%), Positives = 58/91 (63%)
Frame = +3
Query: 6 LSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVYYGQ 185
L V + V + + T R + SS+DV+HS+ +P G+K D I GRLN G++YGQ
Sbjct: 136 LEVDNRVVLPMETPIRMLISSEDVLHSWTVPSMGLKTDAIPGRLNQATLTSSRPGLFYGQ 195
Query: 186 CSEVCGLNHSYMPFVVTVLPENSYLNLFTSI 278
CSE+CG NHS+MP V+ ++P S+ N TS+
Sbjct: 196 CSEICGSNHSFMPIVIEMVPLKSFENWTTSM 226
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,881,905
Number of Sequences: 369166
Number of extensions: 763355
Number of successful extensions: 2539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2528
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)