Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A22
(917 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05490|COX2_OENBE Cytochrome c oxidase subunit 2 (Cytoch... 96 2e-19
sp|P43372|COX2_BRENA Cytochrome c oxidase subunit 2 (Cytoch... 94 5e-19
sp|Q37548|COX2_MACCA Cytochrome c oxidase subunit 2 (Cytoch... 92 3e-18
sp|P43375|COX2_EENNA Cytochrome c oxidase subunit 2 (Cytoch... 92 3e-18
sp|Q00528|COX2_PHOVI Cytochrome c oxidase subunit 2 (Cytoch... 91 3e-18
sp|P38596|COX2_HALGR Cytochrome c oxidase subunit 2 (Cytoch... 91 3e-18
sp|P29163|COX2_PNECA Cytochrome c oxidase subunit 2 (Cytoch... 91 3e-18
sp|Q37596|COX2_PHYHA Cytochrome c oxidase subunit 2 (Cytoch... 91 3e-18
sp|P98043|COX2_TARBA Cytochrome c oxidase subunit 2 (Cytoch... 91 5e-18
sp|P98035|COX2_LEMCA Cytochrome c oxidase subunit 2 (Cytoch... 91 6e-18
>sp|P05490|COX2_OENBE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 258
Score = 95.5 bits (236), Expect = 2e-19
Identities = 43/97 (44%), Positives = 60/97 (61%)
Frame = +1
Query: 19 LRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVY 198
LR L V + V + V T R I +S DV+HS+ +P GVK D + GRLN ++ L GVY
Sbjct: 159 LRLLEVDNRVVVPVKTNLRLIVTSADVLHSWAVPSLGVKCDAVPGRLNQISMLVQREGVY 218
Query: 199 YGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSILSP 309
YGQCSE+CG NH++MP V+ + Y N +++ P
Sbjct: 219 YGQCSEICGTNHAFMPIVIEAVSATDYTNWVSNLFIP 255
>sp|P43372|COX2_BRENA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 248
Score = 94.0 bits (232), Expect = 5e-19
Identities = 45/88 (51%), Positives = 57/88 (64%)
Frame = +1
Query: 19 LRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVY 198
LR L V SV V+T RFI +S DVIH FC+P G+K+D GRLN ++L GVY
Sbjct: 155 LRMLDVDASVVCPVDTHIRFIVTSADVIHDFCMPSLGIKIDAAPGRLNQTSALIQREGVY 214
Query: 199 YGQCSEVCGLNHSYMPFVVTVLPENSYL 282
YGQCSE+CG+ HS MP + V+P +L
Sbjct: 215 YGQCSELCGVMHSAMPIKIEVVPTADFL 242
>sp|Q37548|COX2_MACCA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 91.7 bits (226), Expect = 3e-18
Identities = 43/89 (48%), Positives = 58/89 (65%)
Frame = +1
Query: 1 DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
D+K LR L V + V + V R + SS+DV+HS+ +P G+K D I GRLN L
Sbjct: 127 DLKPGELRLLEVDNRVVLPVEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLLS 186
Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLP 267
+ G+YYGQCSE+CG NHS+MP V+ V+P
Sbjct: 187 IRPGLYYGQCSEICGSNHSFMPIVLEVVP 215
>sp|P43375|COX2_EENNA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 247
Score = 91.7 bits (226), Expect = 3e-18
Identities = 43/88 (48%), Positives = 56/88 (63%)
Frame = +1
Query: 19 LRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLPMSSGVY 198
LR L V SV V+T RF+ +S DVIH FC+P G+K+D GRLN ++L GVY
Sbjct: 154 LRMLDVDASVVCPVDTHMRFMVTSADVIHDFCMPSLGIKIDAAPGRLNQTSALMQREGVY 213
Query: 199 YGQCSEVCGLNHSYMPFVVTVLPENSYL 282
YGQCSE+CG+ HS MP + +P +L
Sbjct: 214 YGQCSELCGVMHSSMPIKIEAVPTVDFL 241
>sp|Q00528|COX2_PHOVI Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 91.3 bits (225), Expect = 3e-18
Identities = 43/101 (42%), Positives = 64/101 (63%)
Frame = +1
Query: 1 DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
++K LR L V + V + + R + SS+DV+HS+ +P G+K D I GRLN +
Sbjct: 127 ELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMT 186
Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
M G+YYGQCSE+CG NHS+MP V+ ++P + + TS+L
Sbjct: 187 MRPGLYYGQCSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227
>sp|P38596|COX2_HALGR Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 91.3 bits (225), Expect = 3e-18
Identities = 43/101 (42%), Positives = 64/101 (63%)
Frame = +1
Query: 1 DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
++K LR L V + V + + R + SS+DV+HS+ +P G+K D I GRLN +
Sbjct: 127 ELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMA 186
Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
M G+YYGQCSE+CG NHS+MP V+ ++P + + TS+L
Sbjct: 187 MRPGLYYGQCSEICGSNHSFMPIVLELVPLSHFEKWSTSML 227
>sp|P29163|COX2_PNECA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 243
Score = 91.3 bits (225), Expect = 3e-18
Identities = 43/95 (45%), Positives = 60/95 (63%)
Frame = +1
Query: 1 DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
D++ LR L V + V + VNT RFI ++ DV+H F +P G+KVD GRLN V++
Sbjct: 144 DLEEGQLRQLEVDNRVLVPVNTPLRFIITATDVLHDFAVPSLGIKVDASPGRLNQVSTYV 203
Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLN 285
GVYYGQCSE+CG+ HS MP V+ + +L+
Sbjct: 204 QREGVYYGQCSELCGVLHSSMPIVIEAVSLEKFLS 238
>sp|Q37596|COX2_PHYHA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 91.3 bits (225), Expect = 3e-18
Identities = 45/101 (44%), Positives = 62/101 (61%)
Frame = +1
Query: 1 DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
D+K LR L V + V I + R + SS+DV+HS+ +P G+K D I GRLN L
Sbjct: 127 DLKSGGLRLLEVDNRVVIPMEMTVRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLLS 186
Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
G+YYGQCSE+CG NHS+MP V+ ++ N + TS+L
Sbjct: 187 TRPGLYYGQCSEICGSNHSFMPIVLEMVTLNCFEKWSTSML 227
>sp|P98043|COX2_TARBA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 90.9 bits (224), Expect = 5e-18
Identities = 43/101 (42%), Positives = 63/101 (62%)
Frame = +1
Query: 1 DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
D+K LR L V + V + + R + SS+DV+HS+ +P G+K D I GRLN +
Sbjct: 127 DLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLMS 186
Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
G+YYGQCSE+CG NHS+MP V+ ++P + N TS++
Sbjct: 187 TRPGLYYGQCSEICGSNHSFMPIVLELVPLKHFENWSTSMI 227
>sp|P98035|COX2_LEMCA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 90.5 bits (223), Expect = 6e-18
Identities = 44/101 (43%), Positives = 60/101 (59%)
Frame = +1
Query: 1 DIKGYLLRNLSVSDSVYICVNTINRFICSSKDVIHSFCIPEFGVKVDCIAGRLNTVNSLP 180
D+K LR L V + V + R + SS+DV+HS+ +P GVK D I GRLN +
Sbjct: 127 DLKPGELRLLEVDNRVVLPTELAVRMLISSEDVLHSWTVPSLGVKTDAIPGRLNQATLMA 186
Query: 181 MSSGVYYGQCSEVCGLNHSYMPFVVTVLPENSYLNLFTSIL 303
GVYYGQCSE+CG NHS+MP V+ ++P + S+L
Sbjct: 187 SRPGVYYGQCSEICGANHSFMPIVLELVPLKHFEEWLLSML 227
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,571,343
Number of Sequences: 369166
Number of extensions: 914988
Number of successful extensions: 2686
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)