Planaria EST Database

DrC_00594

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00594
         (614 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y6H1|CHCH2_HUMAN  Coiled-coil-helix-coiled-coil-helix d...    48   2e-05
sp|Q9D1L0|CHCH2_MOUSE  Coiled-coil-helix-coiled-coil-helix d...    42   0.002
sp|Q09254|YQ5B_CAEEL  Hypothetical protein C16C10.11 in chro...    38   0.018

>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
           (HCV NS2 trans-regulated protein) (NS2TP)
          Length = 151

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 29/99 (29%), Positives = 38/99 (38%)
 Frame = +3

Query: 114 GMFAQMXXXXXXXXXXXXXXXXXXXXLTGGMSGGHNSDXXXXXXXXXXPSYGYXXXXXXX 293
           G+ AQM                    +TGG SGG N++          P  G        
Sbjct: 54  GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQ-GTQPAQQQQ 112

Query: 294 XXXXXXXELLRCTQNESDISLCMGFSEALKDCKRFYGLS 410
                  + L C QN+ DI LC GF+E LK C+   GL+
Sbjct: 113 PCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151

>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
          Length = 153

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
 Frame = +3

Query: 114 GMFAQMXXXXXXXXXXXXXXXXXXXXLTGGMSGGHNSDXXXXXXXXXXPSYGYXXXXXXX 293
           G+ AQM                    +TGG SGG +++          P           
Sbjct: 54  GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQSF 113

Query: 294 XXXXXXX-ELLRCTQNESDISLCMGFSEALKDCKRFYGL 407
                   + L C QN+SD+ LC GF+E L+ C+   GL
Sbjct: 114 GPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152

>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
          Length = 154

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 315 ELLRCTQNESDISLCMGFSEALKDCKRFY 401
           + + C QN+SD+SLC GF++  K CK  Y
Sbjct: 125 QFVDCAQNQSDVSLCNGFNDIFKQCKARY 153

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,714,985
Number of Sequences: 369166
Number of extensions: 635370
Number of successful extensions: 971
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00594

  1. Dr_sW_015_H20
  2. Dr_sW_013_J12
  3. Dr_sW_009_E23
  4. Dr_sW_027_J09
  5. Dr_sW_002_I16
  6. Dr_sW_012_A17