Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A17
(540 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix d... 56 6e-08
sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix d... 50 5e-06
sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chro... 38 0.014
sp|P59204|MALA_STRR6 Maltodextrose utilization protein malA 31 1.7
sp|P59203|MALA_STRPN Maltodextrose utilization protein malA 30 4.9
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
(HCV NS2 trans-regulated protein) (NS2TP)
Length = 151
Score = 55.8 bits (133), Expect = 6e-08
Identities = 32/103 (31%), Positives = 42/103 (40%)
Frame = +1
Query: 28 PKQPGMFAQMXXXXXXXXXXXXXXXXXXXXLTGGMSGGHNSDXXXXXXXXXXPSYGYXXX 207
P+QPG+ AQM +TGG SGG N++ P G
Sbjct: 50 PRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQ-GTQPA 108
Query: 208 XXXXXXXXXXXELLRCTQNESDISLCMGFSEALKDCKRFYGLS 336
+ L C QN+ DI LC GF+E LK C+ GL+
Sbjct: 109 QQQQPCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
Length = 153
Score = 49.7 bits (117), Expect = 5e-06
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +1
Query: 28 PKQPGMFAQMXXXXXXXXXXXXXXXXXXXXLTGGMSGGHNSDXXXXXXXXXXPSYGYXXX 207
P+QPG+ AQM +TGG SGG +++ P
Sbjct: 50 PRQPGLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQN 109
Query: 208 XXXXXXXXXXX-ELLRCTQNESDISLCMGFSEALKDCKRFYGL 333
+ L C QN+SD+ LC GF+E L+ C+ GL
Sbjct: 110 QQSFGPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
Length = 154
Score = 38.1 bits (87), Expect = 0.014
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 241 ELLRCTQNESDISLCMGFSEALKDCKRFY 327
+ + C QN+SD+SLC GF++ K CK Y
Sbjct: 125 QFVDCAQNQSDVSLCNGFNDIFKQCKARY 153
>sp|P59204|MALA_STRR6 Maltodextrose utilization protein malA
Length = 266
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +3
Query: 354 DF*DKNKVYLVHHLVL----LFTLDFFVIKLRNHLLVHSNNNVKLFS 482
D+ +N+VY+ LVL LF L+FF++ L LL++ +LFS
Sbjct: 157 DWYQQNRVYISLFLVLGASFLFGLNFFIVSLGASLLLYITKKSRLFS 203
>sp|P59203|MALA_STRPN Maltodextrose utilization protein malA
Length = 266
Score = 29.6 bits (65), Expect = 4.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 354 DF*DKNKVYLVHHLVL----LFTLDFFVIKLRNHLLVHSNNNVKLFS 482
D+ +N+VY+ LVL LF L+FF++ L L++ +LFS
Sbjct: 157 DWYQQNRVYISLFLVLGASFLFGLNFFIVSLGASFLLYITKRSRLFS 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,076,355
Number of Sequences: 369166
Number of extensions: 520924
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)