Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E23
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix d... 48 2e-05
sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix d... 42 0.001
sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chro... 38 0.013
>sp|Q9Y6H1|CHCH2_HUMAN Coiled-coil-helix-coiled-coil-helix domain containing protein 2
(HCV NS2 trans-regulated protein) (NS2TP)
Length = 151
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/99 (29%), Positives = 38/99 (38%)
Frame = +2
Query: 92 GMFAQMXXXXXXXXXXXXXXXXXXXXLTGGMSGGHNSDXXXXXXXXXXPSYGYXXXXXXX 271
G+ AQM +TGG SGG N++ P G
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQ-GTQPAQQQQ 112
Query: 272 XXXXXXXELLRCTQNESDISLCMGFSEALKDCKRFYGLS 388
+ L C QN+ DI LC GF+E LK C+ GL+
Sbjct: 113 PCLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>sp|Q9D1L0|CHCH2_MOUSE Coiled-coil-helix-coiled-coil-helix domain containing protein 2
Length = 153
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Frame = +2
Query: 92 GMFAQMXXXXXXXXXXXXXXXXXXXXLTGGMSGGHNSDXXXXXXXXXXPSYGYXXXXXXX 271
G+ AQM +TGG SGG +++ P
Sbjct: 54 GLMAQMATTAAGVAVGSAVGHTLGHAITGGFSGGGSAEPAKPDITYQEPQGAQLQNQQSF 113
Query: 272 XXXXXXX-ELLRCTQNESDISLCMGFSEALKDCKRFYGL 385
+ L C QN+SD+ LC GF+E L+ C+ GL
Sbjct: 114 GPCSLEIKQFLECAQNQSDVKLCEGFNEVLRQCRIANGL 152
>sp|Q09254|YQ5B_CAEEL Hypothetical protein C16C10.11 in chromosome III
Length = 154
Score = 38.1 bits (87), Expect = 0.013
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 293 ELLRCTQNESDISLCMGFSEALKDCKRFY 379
+ + C QN+SD+SLC GF++ K CK Y
Sbjct: 125 QFVDCAQNQSDVSLCNGFNDIFKQCKARY 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,127,262
Number of Sequences: 369166
Number of extensions: 485711
Number of successful extensions: 842
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)