Planaria EST Database

DrC_00587

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00587
         (333 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O01159|RSP7_CAEEL  Probable splicing factor, arginine/ser...    38   0.006
sp|P08621|RU17_HUMAN  U1 small nuclear ribonucleoprotein 70 ...    35   0.071
sp|P35311|HSP1_TACAC  Sperm protamine P1                           34   0.12 
sp|Q5T200|K0853_HUMAN  Protein KIAA0853                            33   0.16 
sp|Q7V9F9|RS6_PROMA  30S ribosomal protein S6                      33   0.16 
sp|Q62376|RU17_MOUSE  U1 small nuclear ribonucleoprotein 70 ...    33   0.21 
sp|P09406|RU17_XENLA  U1 small nuclear ribonucleoprotein 70 ...    32   0.35 
sp|P54705|SNWA_DICDI  Protein snwA                                 32   0.35 
sp|Q9H307|PININ_HUMAN  Pinin (140 kDa nuclear and cell adhes...    32   0.35 
sp|Q6C1V6|CWC25_YARLI  Pre-mRNA splicing factor CWC25              31   0.78 

>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 (p54)
          Length = 452

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDT---KARETSRDTKGRETSRDTKGRETSRETKKETR 153
           R  SRD +SR   RD    + R  SRD K R  SRD K R+  R   ++ R
Sbjct: 303 RRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDRKRSRSRDRR 353


 Score = 37.4 bits (85), Expect = 0.011
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRE----TSRDTKGRETSRETKKE 147
           R+  RD K R  SRD K R  SRD K R+     SRD + R  SR+ K+E
Sbjct: 316 RDRDRDRK-RSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDRKRE 364


 Score = 37.4 bits (85), Expect = 0.011
 Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARET----SRDTKGRETSRDTKGRETSRETKKETR 153
           R  SRD K R  SRD K R+     SRD + R  SRD K RE SR   K+ +
Sbjct: 324 RSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDRK-RERSRSRSKDRK 374


 Score = 30.0 bits (66), Expect = 1.7
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 10  RETSRDTKSRET----SRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           R  SRD K R+     SRD + R  SRD K RE SR ++ ++  R+ K+
Sbjct: 333 RSRSRDNKDRDRKRSRSRDRRRRSKSRDRK-RERSR-SRSKDRKRDKKR 379

>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
           (snRNP70) (U1-70K)
          Length = 437

 Score = 34.7 bits (78), Expect = 0.071
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARET-SRDTKGRETSRDTKGRETSRETKKE 147
           RE  R  +SRE  ++ + R + SRD + R  SRD + R  SRE  K+
Sbjct: 237 RERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKD 283


 Score = 31.6 bits (70), Expect = 0.60
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRET-SRETKKETR 153
           R  SRD + R  SRD + R  SR+ + ++  RD K R + SRE  +  R
Sbjct: 256 RSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDRKRRSSRSRERARRER 303


 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +1

Query: 10  RETSRDT-----KSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKET 150
           RE SR+      + R  SRD + R  SRD + R  SR+ + ++  R+ K+ +
Sbjct: 242 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDRKRRS 292

>sp|P35311|HSP1_TACAC Sperm protamine P1
          Length = 69

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
           R  SR  +SR   R T  R+ +R  +GR  SR  +GR + R +++  R
Sbjct: 18  RRRSRRQRSRRGGRQTGPRKITRRGRGRGKSRRRRGRRSMRSSRRRRR 65

>sp|Q5T200|K0853_HUMAN Protein KIAA0853
          Length = 1668

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
           + +SRD +     RD + R  +RDT+ R   RD++    SRE +  +R
Sbjct: 440 QSSSRDHRDDREPRDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSR 487


 Score = 31.2 bits (69), Expect = 0.78
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 22  RDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           RD + R  +RDT+ R   RD++    SR+   R+ SR+TK+
Sbjct: 453 RDGRDRRDARDTRDRRELRDSRDMRDSREM--RDYSRDTKE 491


 Score = 30.4 bits (67), Expect = 1.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
           R  +RDT+ R   RD++    SR+   R+ SRDTK     R+++
Sbjct: 458 RRDARDTRDRRELRDSRDMRDSREM--RDYSRDTKESRDPRDSR 499


 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRE 135
           R+ SRDTK     RD      SR T+     RD +GR+T R+
Sbjct: 483 RDYSRDTKESRDPRD------SRSTRDAHDYRDREGRDTHRK 518


 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
           RE     + + +SRD +     RD + R  +RDT+ R   R+++
Sbjct: 431 REEREYEQDQSSSRDHRDDREPRDGRDRRDARDTRDRRELRDSR 474

>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6
          Length = 210

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 14/42 (33%), Positives = 30/42 (71%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           ++DTK  + ++DTK  + ++DTK  + ++DTK  + +++TK+
Sbjct: 128 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 169


 Score = 33.5 bits (75), Expect = 0.16
 Identities = 14/42 (33%), Positives = 30/42 (71%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           ++DTK  + ++DTK  + ++DTK  + ++DTK  + +++TK+
Sbjct: 137 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 178


 Score = 33.5 bits (75), Expect = 0.16
 Identities = 14/42 (33%), Positives = 30/42 (71%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           ++DTK  + ++DTK  + ++DTK  + ++DTK  + +++TK+
Sbjct: 146 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 187


 Score = 33.5 bits (75), Expect = 0.16
 Identities = 14/42 (33%), Positives = 30/42 (71%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           ++DTK  + ++DTK  + ++DTK  + ++DTK  + +++TK+
Sbjct: 155 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 196


 Score = 33.5 bits (75), Expect = 0.16
 Identities = 14/42 (33%), Positives = 30/42 (71%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           ++DTK  + ++DTK  + ++DTK  + ++DTK  + +++TK+
Sbjct: 164 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 205


 Score = 32.3 bits (72), Expect = 0.35
 Identities = 14/40 (35%), Positives = 28/40 (70%)
 Frame = +1

Query: 25  DTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           DTK  + ++DTK  + ++DTK  + ++DTK  + +++TK+
Sbjct: 121 DTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 160


 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
 Frame = +1

Query: 16  TSRDTKSRE-------TSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           T R+TKS++          DTK  + ++DTK  + ++DTK  + +++TK+
Sbjct: 102 TKRNTKSQDKEASTTNNENDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 151

>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70 kDa)
           (snRNP70)
          Length = 378

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARET-SRDTKGRETSRDTKGRETSRETKKE 147
           RE  R  +SRE  ++ + R + SRD + R  SRD   R  SRE  K+
Sbjct: 167 RERERRERSRERDKERERRRSRSRDRQRRSRSRDKDERRRSRERTKD 213


 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRET-SRETKKETR 153
           R  SRD + R  SRD   R  SR+ + ++  RD K R + SRE  +  R
Sbjct: 186 RSRSRDRQRRSRSRDKDERRRSRE-RTKDKDRDRKRRSSRSRERARRER 233

>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
           (snRNP70) (U1-70K)
          Length = 471

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETS-----RDTKGRETSRETKKE 147
           RE  R ++SRE     + RE S+D K +E       RD K R  SRE K+E
Sbjct: 253 RERRRKSRSREKEERKRTREKSKD-KDKEKDKDNKDRDRKRRSRSRERKRE 302

>sp|P54705|SNWA_DICDI Protein snwA
          Length = 685

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
           SRD++    SRD++    SRD++    +RD + R+ S +  + ++
Sbjct: 445 SRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRRRDDSNDRDRYSK 489


 Score = 32.0 bits (71), Expect = 0.46
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
           +RD++    SRD++    SRD++    SRD++    +R+ ++
Sbjct: 436 NRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRR 477


 Score = 31.2 bits (69), Expect = 0.78
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
           SRD +    SRD++    SRD++    +RD++    +R+ +   R
Sbjct: 433 SRDNRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRR 477


 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 25  DTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
           D++    SRD++    SRD++    SRD +    SR+ +
Sbjct: 432 DSRDNRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSRDNR 470


 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 22  RDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
           RD      +RD++    SRD++    SRD++    SR+++
Sbjct: 428 RDNIDSRDNRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSR 467


 Score = 27.7 bits (60), Expect = 8.7
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 19  SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETRF 156
           SRD++    SRD++    +RD++    +RD +      ++    R+
Sbjct: 442 SRDSRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRRRDDSNDRDRY 487

>sp|Q9H307|PININ_HUMAN Pinin (140 kDa nuclear and cell adhesion-related phosphoprotein)
           (Domain-rich serine protein) (DRS-protein) (DRSP)
           (Melanoma metastasis clone A protein)
           (Desmosome-associated protein) (SR-like protein)
           (Nuclear protein SDK3)
          Length = 717

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +1

Query: 7   GRETSRDTKSRET----SRDTKARETSRDTKGRETSRDTKGRETSRETKKETRFFCQSWK 174
           GR  +RD K R +     RDT   E S  +    +SRDTKG +         R   +   
Sbjct: 637 GRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISE--- 693

Query: 175 VFW*SSQSGKRYHQTHK 225
               SS+SGKR  ++ +
Sbjct: 694 ----SSRSGKRSSRSER 706

>sp|Q6C1V6|CWC25_YARLI Pre-mRNA splicing factor CWC25
          Length = 561

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 7   GRETSRD---TKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKE 147
           GR  SRD    +SRE  RD    E SRD + RE  R  + R+  R+  ++
Sbjct: 253 GRSRSRDRYRNRSRERYRDRSREERSRD-RSRERLRSRRDRDRDRDRDRD 301


 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 10  RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
           R     T+ RE +RD     +  D   R++SR+ + R++SRE    +R
Sbjct: 209 RRDGERTRRRERNRDPSPSVSDDDRGYRQSSREERDRKSSREEGGRSR 256

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,948,492
Number of Sequences: 369166
Number of extensions: 280041
Number of successful extensions: 1139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00587

  1. Dr_sW_015_F16
  2. Dr_sW_020_F13
  3. Dr_sW_027_C22
  4. Dr_sW_027_D21
  5. Dr_sW_021_L16
  6. Dr_sW_001_M01
  7. Dr_sW_012_O08