Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_O08
(282 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/ser... 29 3.8
sp|P58028|AOFB_CAVPO Amine oxidase [flavin-containing] B (M... 28 6.5
sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 ... 28 8.6
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 (p54)
Length = 452
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 6 KARETSRDTKGRETSRDTKGRETSRETKKETR 101
+ R SRD K R SRD K R+ R ++ R
Sbjct: 322 RKRSRSRDRKRRSRSRDNKDRDRKRSRSRDRR 353
>sp|P58028|AOFB_CAVPO Amine oxidase [flavin-containing] B (Monoamine oxidase type B)
(MAO-B)
Length = 520
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 60 KGRETSRETKKET-RFFCQSWKVFW*SSQSGKRYHQTHKGWCQENCS 197
K R+ +R TK+E + C+ + S ++ K H K WC+E S
Sbjct: 348 KARKLARLTKEERLKKLCELYAKVLGSKEALKPVHYEEKNWCEEQYS 394
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 437
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 6 KARETSRDTKGRETSRDTKGRETSRETKKE 95
+ R SRD + R SRD + R SRE K+
Sbjct: 254 RRRSRSRDRRRRSRSRDKEERRRSRERSKD 283
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,316,218
Number of Sequences: 369166
Number of extensions: 250150
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)