Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_M01
(360 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/ser... 34 0.12
sp|Q9H307|PININ_HUMAN Pinin (140 kDa nuclear and cell adhes... 31 0.76
sp|P79149|PININ_CANFA Pinin 31 0.76
sp|P59510|ATS20_HUMAN ADAMTS-20 precursor (A disintegrin an... 31 0.99
sp|Q5T200|K0853_HUMAN Protein KIAA0853 29 2.9
sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 ... 29 3.8
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 29 3.8
sp|Q06666|T2_MOUSE Octapeptide-repeat protein T2 28 4.9
sp|Q5R5X0|PININ_PONPY Pinin 28 4.9
sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band... 28 4.9
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 (p54)
Length = 452
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 64 RETSRDTKSRETSRDTKGRET----SRDTKGRETSRETKKE 174
R SRD K R SRD K R+ SRD + R SR+ K+E
Sbjct: 324 RSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDRKRE 364
Score = 33.1 bits (74), Expect = 0.20
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 46 RTETCGRETSRDTKSRETSRDTKGRETSRDTKGRETSRETKKETR 180
R+ + R+ RD K R SRD K R SRD K R+ R ++ R
Sbjct: 310 RSRSRDRDRDRDRK-RSRSRDRKRRSRSRDNKDRDRKRSRSRDRR 353
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +1
Query: 64 RETSRDTKSRET----SRDTKGRETSRDTKGRETSRETKKETR 180
R SRD K R+ SRD + R SRD K RE SR K+ +
Sbjct: 333 RSRSRDNKDRDRKRSRSRDRRRRSKSRDRK-RERSRSRSKDRK 374
>sp|Q9H307|PININ_HUMAN Pinin (140 kDa nuclear and cell adhesion-related phosphoprotein)
(Domain-rich serine protein) (DRS-protein) (DRSP)
(Melanoma metastasis clone A protein)
(Desmosome-associated protein) (SR-like protein)
(Nuclear protein SDK3)
Length = 717
Score = 31.2 bits (69), Expect = 0.76
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Frame = +1
Query: 43 SRTETCGRETSRDTKSRET----SRDTKGRE---------TSRDTKGRETSRETKKETRF 183
SR+ + GR +RD K R + RDT G E +SRDTKG + R
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRS 690
Query: 184 FCQSWKVFW*SSQSGKRYHQTHK 252
+ SS+SGKR ++ +
Sbjct: 691 ISE-------SSRSGKRSSRSER 706
>sp|P79149|PININ_CANFA Pinin
Length = 773
Score = 31.2 bits (69), Expect = 0.76
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Frame = +1
Query: 43 SRTETCGRETSRDTKSRET----SRDTKGRE---------TSRDTKGRETSRETKKETRF 183
SR+ + GR +RD K R + RDT G E +SRDTKG + R
Sbjct: 687 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRS 746
Query: 184 FCQSWKVFW*SSQSGKRYHQTHK 252
+ SS+SGKR ++ +
Sbjct: 747 ISE-------SSRSGKRSSRSER 762
>sp|P59510|ATS20_HUMAN ADAMTS-20 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20)
Length = 1911
Score = 30.8 bits (68), Expect = 0.99
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Frame = +1
Query: 10 YSHCILSKY*MSRTETCGRETSRDTKSRETSRDTKGRETSRDTKGRETSRETKKE-TRFF 186
+ +C+ +++ S C R +SRE+ D + +E SR T++ F
Sbjct: 963 HGNCVFTRWHYSEWSQCSRSCGGGERSRESYCMNNFGHRLADNECQELSRVTRENCNEFS 1022
Query: 187 CQSWKVFW*SS---QSGKRYHQTHKGWCQENCSY 279
C SW S GK Q + WCQ N +
Sbjct: 1023 CPSWAASEWSECLVTCGKGTKQ-RQVWCQLNVDH 1055
>sp|Q5T200|K0853_HUMAN Protein KIAA0853
Length = 1668
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 76 RDTKSRETSRDTKGRETSRDTKGRETSRETKKETR 180
RD + R +RDT+ R RD++ SRE + +R
Sbjct: 453 RDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSR 487
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 64 RETSRDTKSRETSRDTKGRETSRDTKGRETSRETKK 171
R +RDT+ R RD++ SR+ R+ SR+TK+
Sbjct: 458 RRDARDTRDRRELRDSRDMRDSREM--RDYSRDTKE 491
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +1
Query: 64 RETSRDTK-SRE--TSRDTKGRETSRDTKGRETSRE 162
R+ SRDTK SR+ SR T+ RD +GR+T R+
Sbjct: 483 RDYSRDTKESRDPRDSRSTRDAHDYRDREGRDTHRK 518
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 437
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +1
Query: 64 RETSRDT-----KSRETSRDTKGRETSRDTKGRETSRETKKE 174
RE SR+ + R SRD + R SRD + R SRE K+
Sbjct: 242 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKD 283
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
Length = 489
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 43 SRTETCGRETSRDTKSRETSRDTKGRETSRD-TKGRETSRE 162
SR+ + R S+ KSR S+D K R SR K R S++
Sbjct: 232 SRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDKSRSKSKD 272
>sp|Q06666|T2_MOUSE Octapeptide-repeat protein T2
Length = 185
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 61 GRETSRDTKSRETSRDTKGRETSRDT-KGRETSRETKKE 174
GRE R + RE R +GRE + +GRE RE +++
Sbjct: 77 GREVERHRRGREAERQ-RGREREAERQRGREAEREAERQ 114
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 61 GRETSRDTKSRETSRDTKGRETSRDTKGRETSRETKKETR 180
GRE R+ + + +GR + +GRE RE ++ R
Sbjct: 46 GREAEREAERQRGRERQRGRGEAERQRGRERGREVERHRR 85
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 61 GRETSRDTKSRETSRDT-KGRETSRDTKGRETSRETKKE 174
GRE R E R +GRE R +GRE R+ +E
Sbjct: 58 GRERQRGRGEAERQRGRERGREVERHRRGREAERQRGRE 96
>sp|Q5R5X0|PININ_PONPY Pinin
Length = 719
Score = 28.5 bits (62), Expect = 4.9
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Frame = +1
Query: 43 SRTETCGRETSRDTKSRET----SRDTKGRE---------TSRDTKGRETSRETKKETRF 183
SR+ + GR +RD K R + DT G E +SRDTKG + R
Sbjct: 633 SRSRSRGRGHNRDRKHRRSVDRKRGDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRS 692
Query: 184 FCQSWKVFW*SSQSGKRYHQTHK 252
+ SS+SGKR ++ +
Sbjct: 693 ISE-------SSRSGKRSSRSER 708
>sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)
Length = 488
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 61 GRETSRDTKSRETSRDTKGRETSRDTKGRETSRETKKE 174
G+ET D+ S + +++ +D+KG+E++ E++ E
Sbjct: 199 GKETPSDSGSEKGDAKKDSKKSKKDSKGKESATESEGE 236
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,646,465
Number of Sequences: 369166
Number of extensions: 297880
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)