Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_F16
(334 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/ser... 38 0.006
sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 ... 35 0.071
sp|P35311|HSP1_TACAC Sperm protamine P1 34 0.12
sp|Q5T200|K0853_HUMAN Protein KIAA0853 33 0.16
sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 33 0.16
sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 ... 33 0.21
sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 ... 32 0.35
sp|P54705|SNWA_DICDI Protein snwA 32 0.35
sp|Q9H307|PININ_HUMAN Pinin (140 kDa nuclear and cell adhes... 32 0.35
sp|Q6C1V6|CWC25_YARLI Pre-mRNA splicing factor CWC25 31 0.78
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 (p54)
Length = 452
Score = 38.1 bits (87), Expect = 0.006
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 10 RETSRDTKSRETSRDT---KARETSRDTKGRETSRDTKGRETSRETKKETR 153
R SRD +SR RD + R SRD K R SRD K R+ R ++ R
Sbjct: 303 RRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRDNKDRDRKRSRSRDRR 353
Score = 37.4 bits (85), Expect = 0.011
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRE----TSRDTKGRETSRETKKE 147
R+ RD K R SRD K R SRD K R+ SRD + R SR+ K+E
Sbjct: 316 RDRDRDRK-RSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDRKRE 364
Score = 37.4 bits (85), Expect = 0.011
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARET----SRDTKGRETSRDTKGRETSRETKKETR 153
R SRD K R SRD K R+ SRD + R SRD K RE SR K+ +
Sbjct: 324 RSRSRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDRK-RERSRSRSKDRK 374
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 10 RETSRDTKSRET----SRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
R SRD K R+ SRD + R SRD K RE SR ++ ++ R+ K+
Sbjct: 333 RSRSRDNKDRDRKRSRSRDRRRRSKSRDRK-RERSR-SRSKDRKRDKKR 379
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 437
Score = 34.7 bits (78), Expect = 0.071
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARET-SRDTKGRETSRDTKGRETSRETKKE 147
RE R +SRE ++ + R + SRD + R SRD + R SRE K+
Sbjct: 237 RERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKD 283
Score = 31.6 bits (70), Expect = 0.60
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRET-SRETKKETR 153
R SRD + R SRD + R SR+ + ++ RD K R + SRE + R
Sbjct: 256 RSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDRKRRSSRSRERARRER 303
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +1
Query: 10 RETSRDT-----KSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKET 150
RE SR+ + R SRD + R SRD + R SR+ + ++ R+ K+ +
Sbjct: 242 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE-RSKDKDRDRKRRS 292
>sp|P35311|HSP1_TACAC Sperm protamine P1
Length = 69
Score = 33.9 bits (76), Expect = 0.12
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
R SR +SR R T R+ +R +GR SR +GR + R +++ R
Sbjct: 18 RRRSRRQRSRRGGRQTGPRKITRRGRGRGKSRRRRGRRSMRSSRRRRR 65
>sp|Q5T200|K0853_HUMAN Protein KIAA0853
Length = 1668
Score = 33.5 bits (75), Expect = 0.16
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
+ +SRD + RD + R +RDT+ R RD++ SRE + +R
Sbjct: 440 QSSSRDHRDDREPRDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSR 487
Score = 31.2 bits (69), Expect = 0.78
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 22 RDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
RD + R +RDT+ R RD++ SR+ R+ SR+TK+
Sbjct: 453 RDGRDRRDARDTRDRRELRDSRDMRDSREM--RDYSRDTKE 491
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
R +RDT+ R RD++ SR+ R+ SRDTK R+++
Sbjct: 458 RRDARDTRDRRELRDSRDMRDSREM--RDYSRDTKESRDPRDSR 499
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRE 135
R+ SRDTK RD SR T+ RD +GR+T R+
Sbjct: 483 RDYSRDTKESRDPRD------SRSTRDAHDYRDREGRDTHRK 518
Score = 27.7 bits (60), Expect = 8.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
RE + + +SRD + RD + R +RDT+ R R+++
Sbjct: 431 REEREYEQDQSSSRDHRDDREPRDGRDRRDARDTRDRRELRDSR 474
>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6
Length = 210
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/42 (33%), Positives = 30/42 (71%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
++DTK + ++DTK + ++DTK + ++DTK + +++TK+
Sbjct: 128 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 169
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/42 (33%), Positives = 30/42 (71%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
++DTK + ++DTK + ++DTK + ++DTK + +++TK+
Sbjct: 137 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 178
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/42 (33%), Positives = 30/42 (71%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
++DTK + ++DTK + ++DTK + ++DTK + +++TK+
Sbjct: 146 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 187
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/42 (33%), Positives = 30/42 (71%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
++DTK + ++DTK + ++DTK + ++DTK + +++TK+
Sbjct: 155 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 196
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/42 (33%), Positives = 30/42 (71%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
++DTK + ++DTK + ++DTK + ++DTK + +++TK+
Sbjct: 164 AKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 205
Score = 32.3 bits (72), Expect = 0.35
Identities = 14/40 (35%), Positives = 28/40 (70%)
Frame = +1
Query: 25 DTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
DTK + ++DTK + ++DTK + ++DTK + +++TK+
Sbjct: 121 DTKEVKEAKDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 160
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Frame = +1
Query: 16 TSRDTKSRE-------TSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
T R+TKS++ DTK + ++DTK + ++DTK + +++TK+
Sbjct: 102 TKRNTKSQDKEASTTNNENDTKEVKEAKDTKEVKEAKDTKEVKEAKDTKE 151
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70 kDa)
(snRNP70)
Length = 378
Score = 33.1 bits (74), Expect = 0.21
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARET-SRDTKGRETSRDTKGRETSRETKKE 147
RE R +SRE ++ + R + SRD + R SRD R SRE K+
Sbjct: 167 RERERRERSRERDKERERRRSRSRDRQRRSRSRDKDERRRSRERTKD 213
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRET-SRETKKETR 153
R SRD + R SRD R SR+ + ++ RD K R + SRE + R
Sbjct: 186 RSRSRDRQRRSRSRDKDERRRSRE-RTKDKDRDRKRRSSRSRERARRER 233
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 471
Score = 32.3 bits (72), Expect = 0.35
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETS-----RDTKGRETSRETKKE 147
RE R ++SRE + RE S+D K +E RD K R SRE K+E
Sbjct: 253 RERRRKSRSREKEERKRTREKSKD-KDKEKDKDNKDRDRKRRSRSRERKRE 302
>sp|P54705|SNWA_DICDI Protein snwA
Length = 685
Score = 32.3 bits (72), Expect = 0.35
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
SRD++ SRD++ SRD++ +RD + R+ S + + ++
Sbjct: 445 SRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRRRDDSNDRDRYSK 489
Score = 32.0 bits (71), Expect = 0.46
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKK 144
+RD++ SRD++ SRD++ SRD++ +R+ ++
Sbjct: 436 NRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRR 477
Score = 31.2 bits (69), Expect = 0.78
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
SRD + SRD++ SRD++ +RD++ +R+ + R
Sbjct: 433 SRDNRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRR 477
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 25 DTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
D++ SRD++ SRD++ SRD + SR+ +
Sbjct: 432 DSRDNRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSRDNR 470
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 22 RDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETK 141
RD +RD++ SRD++ SRD++ SR+++
Sbjct: 428 RDNIDSRDNRDSRDSRDSRDSRDSRDSRDSRDNRDSRDSR 467
Score = 27.7 bits (60), Expect = 8.7
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +1
Query: 19 SRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETRF 156
SRD++ SRD++ +RD++ +RD + ++ R+
Sbjct: 442 SRDSRDSRDSRDSRDSRDNRDSRDSRDNRDNRDNRRRDDSNDRDRY 487
>sp|Q9H307|PININ_HUMAN Pinin (140 kDa nuclear and cell adhesion-related phosphoprotein)
(Domain-rich serine protein) (DRS-protein) (DRSP)
(Melanoma metastasis clone A protein)
(Desmosome-associated protein) (SR-like protein)
(Nuclear protein SDK3)
Length = 717
Score = 32.3 bits (72), Expect = 0.35
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +1
Query: 7 GRETSRDTKSRET----SRDTKARETSRDTKGRETSRDTKGRETSRETKKETRFFCQSWK 174
GR +RD K R + RDT E S + +SRDTKG + R +
Sbjct: 637 GRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISE--- 693
Query: 175 VFW*SSQSGKRYHQTHK 225
SS+SGKR ++ +
Sbjct: 694 ----SSRSGKRSSRSER 706
>sp|Q6C1V6|CWC25_YARLI Pre-mRNA splicing factor CWC25
Length = 561
Score = 31.2 bits (69), Expect = 0.78
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 7 GRETSRD---TKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKE 147
GR SRD +SRE RD E SRD + RE R + R+ R+ ++
Sbjct: 253 GRSRSRDRYRNRSRERYRDRSREERSRD-RSRERLRSRRDRDRDRDRDRD 301
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 10 RETSRDTKSRETSRDTKARETSRDTKGRETSRDTKGRETSRETKKETR 153
R T+ RE +RD + D R++SR+ + R++SRE +R
Sbjct: 209 RRDGERTRRRERNRDPSPSVSDDDRGYRQSSREERDRKSSREEGGRSR 256
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,000,614
Number of Sequences: 369166
Number of extensions: 273604
Number of successful extensions: 1137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)