Planaria EST Database


DrC_00579

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00579
         (874 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7SXW4|POB_BRARE  Protein pob                                  306   6e-83
sp|Q99KI3|U347_MOUSE  UPF0347 protein LOC55831 homolog >gi|7...   302   9e-82
sp|Q5R7C1|U347_PONPY  UPF0347 protein LOC55831 homolog >gi|7...   302   9e-82
sp|P36039|YKU7_YEAST  UPF0347 protein YKL207w                     126   9e-29
sp|P41764|G6PD_EMENI  Glucose-6-phosphate 1-dehydrogenase (G...    31   5.1  
sp|P48826|G6PD_ASPNG  Glucose-6-phosphate 1-dehydrogenase (G...    31   5.1  
>sp|Q7SXW4|POB_BRARE Protein pob
          Length = 261

 Score =  306 bits (783), Expect = 6e-83
 Identities = 151/250 (60%), Positives = 188/250 (75%), Gaps = 5/250 (2%)
 Frame = +3

Query: 36  ELFLDSAIRFWVFLPLALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLREN 215
           EL LDS IR WV LP+  IT+L G+IRHY++IL+ ++KK  L+ V DS  LIRSR+LREN
Sbjct: 5   ELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRVLREN 64

Query: 216 GKYLTKQAFNMRKHYFNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVI 395
           GKY+ KQ+F MRK YFN+ E GFFK  KR     +PMTDPS +++M+KGN  NV+PM++I
Sbjct: 65  GKYIPKQSFLMRKFYFNNQEDGFFKKTKRKVVPPSPMTDPSMLTDMMKGNVTNVLPMILI 124

Query: 396 GTWINSAFTGFLTTKVPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMY 575
           G WIN  F+GF+TTKVPFPLT RFKPMLQ+G E L+SLDASWVSSASWYFLN+FGLRSMY
Sbjct: 125 GGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIE-LLSLDASWVSSASWYFLNVFGLRSMY 183

Query: 576 GLVLGQDNSAEQPTMMRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLI- 752
            L+LGQDN A+Q  +M++  S  A     D+ KAFK EWEALE+ DH W L++V   L+ 
Sbjct: 184 SLILGQDNGADQSRIMQEQMSGAAMAMPADTNKAFKAEWEALELTDHQWALENVEEDLMS 243

Query: 753 ----LNGMNS 770
               L+GM S
Sbjct: 244 KDLDLSGMFS 253
>sp|Q99KI3|U347_MOUSE UPF0347 protein LOC55831 homolog
 sp|Q5U2V8|U347_RAT UPF0347 protein LOC55831 homolog
          Length = 261

 Score =  302 bits (773), Expect = 9e-82
 Identities = 143/244 (58%), Positives = 186/244 (76%)
 Frame = +3

Query: 36  ELFLDSAIRFWVFLPLALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLREN 215
           EL LDS IR WV LP+ +IT+  G+IRHY++IL+ ++KK   + V DS  LIRSR+LREN
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 216 GKYLTKQAFNMRKHYFNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVI 395
           GKY+ KQ+F  RK+YFN+ E GFFK  KR     +PMTDP+ +++M+KGN  NV+PM++I
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124

Query: 396 GTWINSAFTGFLTTKVPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMY 575
           G WIN  F+GF+TTKVPFPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y
Sbjct: 125 GGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIY 183

Query: 576 GLVLGQDNSAEQPTMMRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLIL 755
            L+LGQDN+A+Q  MM++  +  A     D+ KAFKTEWEALE+ DH W L DV  +L+ 
Sbjct: 184 SLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMA 243

Query: 756 NGMN 767
             ++
Sbjct: 244 RDLH 247
>sp|Q5R7C1|U347_PONPY UPF0347 protein LOC55831 homolog
 sp|Q9P0I2|U347_HUMAN UPF0347 protein LOC55831
          Length = 261

 Score =  302 bits (773), Expect = 9e-82
 Identities = 143/244 (58%), Positives = 186/244 (76%)
 Frame = +3

Query: 36  ELFLDSAIRFWVFLPLALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLREN 215
           EL LDS IR WV LP+ +IT+  G+IRHY++IL+ ++KK   + V DS  LIRSR+LREN
Sbjct: 5   ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64

Query: 216 GKYLTKQAFNMRKHYFNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVI 395
           GKY+ KQ+F  RK+YFN+ E GFFK  KR     +PMTDP+ +++M+KGN  NV+PM++I
Sbjct: 65  GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124

Query: 396 GTWINSAFTGFLTTKVPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMY 575
           G WIN  F+GF+TTKVPFPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y
Sbjct: 125 GGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIY 183

Query: 576 GLVLGQDNSAEQPTMMRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLIL 755
            L+LGQDN+A+Q  MM++  +  A     D+ KAFKTEWEALE+ DH W L DV  +L+ 
Sbjct: 184 SLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMA 243

Query: 756 NGMN 767
             ++
Sbjct: 244 KDLH 247
>sp|P36039|YKU7_YEAST UPF0347 protein YKL207w
          Length = 260

 Score =  126 bits (316), Expect = 9e-29
 Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 16/199 (8%)
 Frame = +3

Query: 36  ELFLDSAIRFWVFLPLALITYLFGIIRHYITILIT----NEKKPDLQAVVDSHALIRSRL 203
           ++ LD  +++WV LP++++  L G+++ YI  LIT    NE +P ++ + +   L  ++L
Sbjct: 29  QMLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVK-LTEWQYLQWAQL 87

Query: 204 LRENGKYLTKQAFNMRKHYFNDS---ETGFFKVQKRDST----AKNPMTDPS---AMSEM 353
           L  NG  L+  AF  +K +       E    K +++D +      NP  DPS   AM  M
Sbjct: 88  LIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNM 147

Query: 354 VKGNALNVIPMLVIGTWINSAFTGFLTTKVPFPLTYRFKPMLQKG--CESLVSLDASWVS 527
            KGN  + IP  +I  W+N  F GF+  ++PFPLT +FK MLQ G  C+    LD  WVS
Sbjct: 148 AKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQ---DLDVRWVS 204

Query: 528 SASWYFLNIFGLRSMYGLV 584
           S SWYF+++ GL  +Y L+
Sbjct: 205 SISWYFISVLGLNPVYNLI 223
>sp|P41764|G6PD_EMENI Glucose-6-phosphate 1-dehydrogenase (G6PD)
          Length = 511

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 651 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 803
           Q+ +D QKA +  W+  EI  +DH    + V N LI+   N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
>sp|P48826|G6PD_ASPNG Glucose-6-phosphate 1-dehydrogenase (G6PD)
          Length = 510

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 651 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 803
           Q+ +D QKA +  W+  EI  +DH    + V N LI+   N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,701,245
Number of Sequences: 369166
Number of extensions: 1915490
Number of successful extensions: 4886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4878
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00579

  1. Dr_sW_015_C22
  2. Dr_sW_010_B01
  3. Dr_sW_010_M24