Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_C22
(874 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7SXW4|POB_BRARE Protein pob 306 6e-83
sp|Q99KI3|U347_MOUSE UPF0347 protein LOC55831 homolog >gi|7... 302 9e-82
sp|Q5R7C1|U347_PONPY UPF0347 protein LOC55831 homolog >gi|7... 302 9e-82
sp|P36039|YKU7_YEAST UPF0347 protein YKL207w 126 9e-29
sp|P41764|G6PD_EMENI Glucose-6-phosphate 1-dehydrogenase (G... 31 5.1
sp|P48826|G6PD_ASPNG Glucose-6-phosphate 1-dehydrogenase (G... 31 5.1
>sp|Q7SXW4|POB_BRARE Protein pob
Length = 261
Score = 306 bits (783), Expect = 6e-83
Identities = 151/250 (60%), Positives = 188/250 (75%), Gaps = 5/250 (2%)
Frame = +3
Query: 36 ELFLDSAIRFWVFLPLALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLREN 215
EL LDS IR WV LP+ IT+L G+IRHY++IL+ ++KK L+ V DS LIRSR+LREN
Sbjct: 5 ELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRVLREN 64
Query: 216 GKYLTKQAFNMRKHYFNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVI 395
GKY+ KQ+F MRK YFN+ E GFFK KR +PMTDPS +++M+KGN NV+PM++I
Sbjct: 65 GKYIPKQSFLMRKFYFNNQEDGFFKKTKRKVVPPSPMTDPSMLTDMMKGNVTNVLPMILI 124
Query: 396 GTWINSAFTGFLTTKVPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMY 575
G WIN F+GF+TTKVPFPLT RFKPMLQ+G E L+SLDASWVSSASWYFLN+FGLRSMY
Sbjct: 125 GGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIE-LLSLDASWVSSASWYFLNVFGLRSMY 183
Query: 576 GLVLGQDNSAEQPTMMRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLI- 752
L+LGQDN A+Q +M++ S A D+ KAFK EWEALE+ DH W L++V L+
Sbjct: 184 SLILGQDNGADQSRIMQEQMSGAAMAMPADTNKAFKAEWEALELTDHQWALENVEEDLMS 243
Query: 753 ----LNGMNS 770
L+GM S
Sbjct: 244 KDLDLSGMFS 253
>sp|Q99KI3|U347_MOUSE UPF0347 protein LOC55831 homolog
sp|Q5U2V8|U347_RAT UPF0347 protein LOC55831 homolog
Length = 261
Score = 302 bits (773), Expect = 9e-82
Identities = 143/244 (58%), Positives = 186/244 (76%)
Frame = +3
Query: 36 ELFLDSAIRFWVFLPLALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLREN 215
EL LDS IR WV LP+ +IT+ G+IRHY++IL+ ++KK + V DS LIRSR+LREN
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 216 GKYLTKQAFNMRKHYFNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVI 395
GKY+ KQ+F RK+YFN+ E GFFK KR +PMTDP+ +++M+KGN NV+PM++I
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124
Query: 396 GTWINSAFTGFLTTKVPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMY 575
G WIN F+GF+TTKVPFPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y
Sbjct: 125 GGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIY 183
Query: 576 GLVLGQDNSAEQPTMMRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLIL 755
L+LGQDN+A+Q MM++ + A D+ KAFKTEWEALE+ DH W L DV +L+
Sbjct: 184 SLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMA 243
Query: 756 NGMN 767
++
Sbjct: 244 RDLH 247
>sp|Q5R7C1|U347_PONPY UPF0347 protein LOC55831 homolog
sp|Q9P0I2|U347_HUMAN UPF0347 protein LOC55831
Length = 261
Score = 302 bits (773), Expect = 9e-82
Identities = 143/244 (58%), Positives = 186/244 (76%)
Frame = +3
Query: 36 ELFLDSAIRFWVFLPLALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLREN 215
EL LDS IR WV LP+ +IT+ G+IRHY++IL+ ++KK + V DS LIRSR+LREN
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 216 GKYLTKQAFNMRKHYFNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVI 395
GKY+ KQ+F RK+YFN+ E GFFK KR +PMTDP+ +++M+KGN NV+PM++I
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILI 124
Query: 396 GTWINSAFTGFLTTKVPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMY 575
G WIN F+GF+TTKVPFPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y
Sbjct: 125 GGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIY 183
Query: 576 GLVLGQDNSAEQPTMMRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLIL 755
L+LGQDN+A+Q MM++ + A D+ KAFKTEWEALE+ DH W L DV +L+
Sbjct: 184 SLILGQDNAADQSRMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMA 243
Query: 756 NGMN 767
++
Sbjct: 244 KDLH 247
>sp|P36039|YKU7_YEAST UPF0347 protein YKL207w
Length = 260
Score = 126 bits (316), Expect = 9e-29
Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 16/199 (8%)
Frame = +3
Query: 36 ELFLDSAIRFWVFLPLALITYLFGIIRHYITILIT----NEKKPDLQAVVDSHALIRSRL 203
++ LD +++WV LP++++ L G+++ YI LIT NE +P ++ + + L ++L
Sbjct: 29 QMLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVK-LTEWQYLQWAQL 87
Query: 204 LRENGKYLTKQAFNMRKHYFNDS---ETGFFKVQKRDST----AKNPMTDPS---AMSEM 353
L NG L+ AF +K + E K +++D + NP DPS AM M
Sbjct: 88 LIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNM 147
Query: 354 VKGNALNVIPMLVIGTWINSAFTGFLTTKVPFPLTYRFKPMLQKG--CESLVSLDASWVS 527
KGN + IP +I W+N F GF+ ++PFPLT +FK MLQ G C+ LD WVS
Sbjct: 148 AKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQ---DLDVRWVS 204
Query: 528 SASWYFLNIFGLRSMYGLV 584
S SWYF+++ GL +Y L+
Sbjct: 205 SISWYFISVLGLNPVYNLI 223
>sp|P41764|G6PD_EMENI Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 511
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 651 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 803
Q+ +D QKA + W+ EI +DH + V N LI+ N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
>sp|P48826|G6PD_ASPNG Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 510
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 651 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 803
Q+ +D QKA + W+ EI +DH + V N LI+ N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,701,245
Number of Sequences: 369166
Number of extensions: 1915490
Number of successful extensions: 4886
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4878
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)