Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M24
(790 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7SXW4|POB_BRARE Protein pob 284 2e-76
sp|Q99KI3|U347_MOUSE UPF0347 protein LOC55831 homolog >gi|7... 280 3e-75
sp|Q5R7C1|U347_PONPY UPF0347 protein LOC55831 homolog >gi|7... 280 3e-75
sp|P36039|YKU7_YEAST UPF0347 protein YKL207w 107 4e-23
sp|P41764|G6PD_EMENI Glucose-6-phosphate 1-dehydrogenase (G... 31 4.4
sp|P48826|G6PD_ASPNG Glucose-6-phosphate 1-dehydrogenase (G... 31 4.4
sp|Q9WTI7|MYO1C_MOUSE Myosin Ic (Myosin I beta) (MMIb) 30 9.9
>sp|Q7SXW4|POB_BRARE Protein pob
Length = 261
Score = 284 bits (726), Expect = 2e-76
Identities = 140/232 (60%), Positives = 176/232 (75%), Gaps = 5/232 (2%)
Frame = +3
Query: 6 ITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNMRKHYFND 185
IT+L G+IRHY++IL+ ++KK L+ V DS LIRSR+LRENGKY+ KQ+F MRK YFN+
Sbjct: 23 ITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRVLRENGKYIPKQSFLMRKFYFNN 82
Query: 186 SETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVIGTWINSAFTGFLTTKVPF 365
E GFFK KR +PMTDPS +++M+KGN NV+PM++IG WIN F+GF+TTKVPF
Sbjct: 83 QEDGFFKKTKRKVVPPSPMTDPSMLTDMMKGNVTNVLPMILIGGWINWTFSGFVTTKVPF 142
Query: 366 PLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQPTMMRD 545
PLT RFKPMLQ+G E L+SLDASWVSSASWYFLN+FGLRSMY L+LGQDN A+Q +M++
Sbjct: 143 PLTLRFKPMLQQGIE-LLSLDASWVSSASWYFLNVFGLRSMYSLILGQDNGADQSRIMQE 201
Query: 546 PTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLI-----LNGMNS 686
S A D+ KAFK EWEALE+ DH W L++V L+ L+GM S
Sbjct: 202 QMSGAAMAMPADTNKAFKAEWEALELTDHQWALENVEEDLMSKDLDLSGMFS 253
>sp|Q99KI3|U347_MOUSE UPF0347 protein LOC55831 homolog
sp|Q5U2V8|U347_RAT UPF0347 protein LOC55831 homolog
Length = 261
Score = 280 bits (716), Expect = 3e-75
Identities = 132/227 (58%), Positives = 174/227 (76%)
Frame = +3
Query: 3 LITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNMRKHYFN 182
+IT+ G+IRHY++IL+ ++KK + V DS LIRSR+LRENGKY+ KQ+F RK+YFN
Sbjct: 22 IITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFN 81
Query: 183 DSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVIGTWINSAFTGFLTTKVP 362
+ E GFFK KR +PMTDP+ +++M+KGN NV+PM++IG WIN F+GF+TTKVP
Sbjct: 82 NPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVP 141
Query: 363 FPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQPTMMR 542
FPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y L+LGQDN+A+Q MM+
Sbjct: 142 FPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQ 200
Query: 543 DPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLILNGMN 683
+ + A D+ KAFKTEWEALE+ DH W L DV +L+ ++
Sbjct: 201 EQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMARDLH 247
>sp|Q5R7C1|U347_PONPY UPF0347 protein LOC55831 homolog
sp|Q9P0I2|U347_HUMAN UPF0347 protein LOC55831
Length = 261
Score = 280 bits (716), Expect = 3e-75
Identities = 132/227 (58%), Positives = 174/227 (76%)
Frame = +3
Query: 3 LITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNMRKHYFN 182
+IT+ G+IRHY++IL+ ++KK + V DS LIRSR+LRENGKY+ KQ+F RK+YFN
Sbjct: 22 IITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFN 81
Query: 183 DSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVIGTWINSAFTGFLTTKVP 362
+ E GFFK KR +PMTDP+ +++M+KGN NV+PM++IG WIN F+GF+TTKVP
Sbjct: 82 NPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVP 141
Query: 363 FPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQPTMMR 542
FPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y L+LGQDN+A+Q MM+
Sbjct: 142 FPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQ 200
Query: 543 DPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLILNGMN 683
+ + A D+ KAFKTEWEALE+ DH W L DV +L+ ++
Sbjct: 201 EQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMAKDLH 247
>sp|P36039|YKU7_YEAST UPF0347 protein YKL207w
Length = 260
Score = 107 bits (267), Expect = 4e-23
Identities = 67/182 (36%), Positives = 99/182 (54%), Gaps = 16/182 (8%)
Frame = +3
Query: 3 LITYLFGIIRHYITILIT----NEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNMRK 170
++ L G+++ YI LIT NE +P ++ + + L ++LL NG L+ AF +K
Sbjct: 46 IVMVLTGVLKQYIMTLITGSSANEAQPRVK-LTEWQYLQWAQLLIGNGGNLSSDAFAAKK 104
Query: 171 HYFNDS---ETGFFKVQKRDST----AKNPMTDPS---AMSEMVKGNALNVIPMLVIGTW 320
+ E K +++D + NP DPS AM M KGN + IP +I W
Sbjct: 105 EFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNMAKGNMASFIPQTIIMWW 164
Query: 321 INSAFTGFLTTKVPFPLTYRFKPMLQKG--CESLVSLDASWVSSASWYFLNIFGLRSMYG 494
+N F GF+ ++PFPLT +FK MLQ G C+ LD WVSS SWYF+++ GL +Y
Sbjct: 165 VNHFFAGFILMQLPFPLTAKFKEMLQTGIICQ---DLDVRWVSSISWYFISVLGLNPVYN 221
Query: 495 LV 500
L+
Sbjct: 222 LI 223
>sp|P41764|G6PD_EMENI Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 511
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 567 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 719
Q+ +D QKA + W+ EI +DH + V N LI+ N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
>sp|P48826|G6PD_ASPNG Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 510
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 567 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 719
Q+ +D QKA + W+ EI +DH + V N LI+ N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
>sp|Q9WTI7|MYO1C_MOUSE Myosin Ic (Myosin I beta) (MMIb)
Length = 1028
Score = 29.6 bits (65), Expect = 9.9
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 381 FKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQ 527
F +++K SL S DA S SW + GL +YG + Q NS EQ
Sbjct: 355 FTWLVRKINRSLASKDAE---SPSWRSTTVLGLLDIYGFEVFQHNSFEQ 400
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,964,167
Number of Sequences: 369166
Number of extensions: 1769111
Number of successful extensions: 4469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4462
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)