Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B01
(795 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7SXW4|POB_BRARE Protein pob 285 1e-76
sp|Q99KI3|U347_MOUSE UPF0347 protein LOC55831 homolog >gi|7... 281 2e-75
sp|Q5R7C1|U347_PONPY UPF0347 protein LOC55831 homolog >gi|7... 281 2e-75
sp|P36039|YKU7_YEAST UPF0347 protein YKL207w 108 2e-23
sp|P41764|G6PD_EMENI Glucose-6-phosphate 1-dehydrogenase (G... 31 4.4
sp|P48826|G6PD_ASPNG Glucose-6-phosphate 1-dehydrogenase (G... 31 4.4
sp|Q9WTI7|MYO1C_MOUSE Myosin Ic (Myosin I beta) (MMIb) 30 9.9
>sp|Q7SXW4|POB_BRARE Protein pob
Length = 261
Score = 285 bits (728), Expect = 1e-76
Identities = 140/235 (59%), Positives = 177/235 (75%), Gaps = 5/235 (2%)
Frame = +2
Query: 2 LALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNMRKHY 181
+ IT+L G+IRHY++IL+ ++KK L+ V DS LIRSR+LRENGKY+ KQ+F MRK Y
Sbjct: 20 IVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRVLRENGKYIPKQSFLMRKFY 79
Query: 182 FNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVIGTWINSAFTGFLTTK 361
FN+ E GFFK KR +PMTDPS +++M+KGN NV+PM++IG WIN F+GF+TTK
Sbjct: 80 FNNQEDGFFKKTKRKVVPPSPMTDPSMLTDMMKGNVTNVLPMILIGGWINWTFSGFVTTK 139
Query: 362 VPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQPTM 541
VPFPLT RFKPMLQ+G E L+SLDASWVSSASWYFLN+FGLRSMY L+LGQDN A+Q +
Sbjct: 140 VPFPLTLRFKPMLQQGIE-LLSLDASWVSSASWYFLNVFGLRSMYSLILGQDNGADQSRI 198
Query: 542 MRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLI-----LNGMNS 691
M++ S A D+ KAFK EWEALE+ DH W L++V L+ L+GM S
Sbjct: 199 MQEQMSGAAMAMPADTNKAFKAEWEALELTDHQWALENVEEDLMSKDLDLSGMFS 253
>sp|Q99KI3|U347_MOUSE UPF0347 protein LOC55831 homolog
sp|Q5U2V8|U347_RAT UPF0347 protein LOC55831 homolog
Length = 261
Score = 281 bits (718), Expect = 2e-75
Identities = 132/229 (57%), Positives = 175/229 (76%)
Frame = +2
Query: 2 LALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNMRKHY 181
+ +IT+ G+IRHY++IL+ ++KK + V DS LIRSR+LRENGKY+ KQ+F RK+Y
Sbjct: 20 IVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYY 79
Query: 182 FNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVIGTWINSAFTGFLTTK 361
FN+ E GFFK KR +PMTDP+ +++M+KGN NV+PM++IG WIN F+GF+TTK
Sbjct: 80 FNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTK 139
Query: 362 VPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQPTM 541
VPFPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y L+LGQDN+A+Q M
Sbjct: 140 VPFPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRM 198
Query: 542 MRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLILNGMN 688
M++ + A D+ KAFKTEWEALE+ DH W L DV +L+ ++
Sbjct: 199 MQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMARDLH 247
>sp|Q5R7C1|U347_PONPY UPF0347 protein LOC55831 homolog
sp|Q9P0I2|U347_HUMAN UPF0347 protein LOC55831
Length = 261
Score = 281 bits (718), Expect = 2e-75
Identities = 132/229 (57%), Positives = 175/229 (76%)
Frame = +2
Query: 2 LALITYLFGIIRHYITILITNEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNMRKHY 181
+ +IT+ G+IRHY++IL+ ++KK + V DS LIRSR+LRENGKY+ KQ+F RK+Y
Sbjct: 20 IVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYY 79
Query: 182 FNDSETGFFKVQKRDSTAKNPMTDPSAMSEMVKGNALNVIPMLVIGTWINSAFTGFLTTK 361
FN+ E GFFK KR +PMTDP+ +++M+KGN NV+PM++IG WIN F+GF+TTK
Sbjct: 80 FNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTK 139
Query: 362 VPFPLTYRFKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQPTM 541
VPFPLT RFKPMLQ+G E L++LDASWVSSASWYFLN+FGLRS+Y L+LGQDN+A+Q M
Sbjct: 140 VPFPLTLRFKPMLQQGIE-LLTLDASWVSSASWYFLNVFGLRSIYSLILGQDNAADQSRM 198
Query: 542 MRDPTSTMAAQTGQDSQKAFKTEWEALEIVDHNWVLKDVPNKLILNGMN 688
M++ + A D+ KAFKTEWEALE+ DH W L DV +L+ ++
Sbjct: 199 MQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEEELMAKDLH 247
>sp|P36039|YKU7_YEAST UPF0347 protein YKL207w
Length = 260
Score = 108 bits (270), Expect = 2e-23
Identities = 67/184 (36%), Positives = 101/184 (54%), Gaps = 16/184 (8%)
Frame = +2
Query: 2 LALITYLFGIIRHYITILIT----NEKKPDLQAVVDSHALIRSRLLRENGKYLTKQAFNM 169
++++ L G+++ YI LIT NE +P ++ + + L ++LL NG L+ AF
Sbjct: 44 ISIVMVLTGVLKQYIMTLITGSSANEAQPRVK-LTEWQYLQWAQLLIGNGGNLSSDAFAA 102
Query: 170 RKHYFNDS---ETGFFKVQKRDST----AKNPMTDPS---AMSEMVKGNALNVIPMLVIG 319
+K + E K +++D + NP DPS AM M KGN + IP +I
Sbjct: 103 KKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNMAKGNMASFIPQTIIM 162
Query: 320 TWINSAFTGFLTTKVPFPLTYRFKPMLQKG--CESLVSLDASWVSSASWYFLNIFGLRSM 493
W+N F GF+ ++PFPLT +FK MLQ G C+ LD WVSS SWYF+++ GL +
Sbjct: 163 WWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQ---DLDVRWVSSISWYFISVLGLNPV 219
Query: 494 YGLV 505
Y L+
Sbjct: 220 YNLI 223
>sp|P41764|G6PD_EMENI Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 511
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 572 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 724
Q+ +D QKA + W+ EI +DH + V N LI+ N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
>sp|P48826|G6PD_ASPNG Glucose-6-phosphate 1-dehydrogenase (G6PD)
Length = 510
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 572 QTGQDSQKAFKTEWEALEI--VDHNWVLKDVPNKLILNGMNSYQNCTHNNNRM 724
Q+ +D QKA + W+ EI +DH + V N LI+ N + N T N + +
Sbjct: 171 QSSRDLQKALEPNWKEEEIFRIDHYLGKEMVKNILIMRFGNEFFNATWNRHHI 223
>sp|Q9WTI7|MYO1C_MOUSE Myosin Ic (Myosin I beta) (MMIb)
Length = 1028
Score = 29.6 bits (65), Expect = 9.9
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 386 FKPMLQKGCESLVSLDASWVSSASWYFLNIFGLRSMYGLVLGQDNSAEQ 532
F +++K SL S DA S SW + GL +YG + Q NS EQ
Sbjct: 355 FTWLVRKINRSLASKDAE---SPSWRSTTVLGLLDIYGFEVFQHNSFEQ 400
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,064,668
Number of Sequences: 369166
Number of extensions: 1770248
Number of successful extensions: 4583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4577
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)