Planaria EST Database

DrC_00571

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00571
         (962 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46638|RB11B_MOUSE  Ras-related protein Rab-11B                313   5e-85
sp|O35509|RB11B_RAT  Ras-related protein Rab-11B >gi|3825893...   313   5e-85
sp|P22129|RB11B_DISOM  Ras-related protein Rab-11B (ORA3)         312   8e-85
sp|P62494|RB11A_RAT  Ras-related protein Rab-11A (Rab-11) (2...   308   1e-83
sp|Q39572|YPTC6_CHLRE  Ras-related protein YPTC6                  295   2e-79
sp|P40393|RIC2_ORYSA  Ras-related protein RIC2                    288   2e-77
sp|O04486|RB11C_ARATH  Ras-related protein Rab11C                 286   5e-77
sp|Q39222|RB11B_ARATH  Ras-related protein Rab11                  286   8e-77
sp|Q01111|YPT3_NICPL  Ras-related protein YPT3                    285   1e-76
sp|Q96283|RB11A_ARATH  Ras-related protein Rab11A                 285   1e-76

>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B
          Length = 218

 Score =  313 bits (802), Expect = 5e-85
 Identities = 162/215 (75%), Positives = 182/215 (84%), Gaps = 4/215 (1%)
 Frame = +3

Query: 27  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
           RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4   RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63

Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
           IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVG
Sbjct: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 123

Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPME 566
           NKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF  IL+ IYRIVSQ+   +
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 183

Query: 567 SA----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 659
            A      G+ +    + P+ D    N   K  CC
Sbjct: 184 RAAHDESPGNNVVDISVPPTTDGQRPN---KLQCC 215

>sp|O35509|RB11B_RAT Ras-related protein Rab-11B
 sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B (GTP-binding protein YPT3)
          Length = 218

 Score =  313 bits (802), Expect = 5e-85
 Identities = 162/215 (75%), Positives = 182/215 (84%), Gaps = 4/215 (1%)
 Frame = +3

Query: 27  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
           RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4   RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63

Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
           IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVG
Sbjct: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 123

Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPME 566
           NKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF  IL+ IYRIVSQ+   +
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 183

Query: 567 SA----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 659
            A      G+ +    + P+ D    N   K  CC
Sbjct: 184 RAAHDESPGNNVVDISVPPTTDGQKPN---KLQCC 215

>sp|P22129|RB11B_DISOM Ras-related protein Rab-11B (ORA3)
          Length = 218

 Score =  312 bits (800), Expect = 8e-85
 Identities = 162/216 (75%), Positives = 183/216 (84%), Gaps = 5/216 (2%)
 Frame = +3

Query: 27  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
           RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4   RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63

Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
           IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHAD+NIVIMLVG
Sbjct: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVG 123

Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQ----- 551
           NKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF  IL+ IYRIVSQ     
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISD 183

Query: 552 RPPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCC 659
           R   + +P G+ +    + P+ D    N   K  CC
Sbjct: 184 RSAHDESP-GNNVVDISVPPTTDGQKSN---KLQCC 215

>sp|P62494|RB11A_RAT Ras-related protein Rab-11A (Rab-11) (24KG)
 sp|P62493|RB11A_RABIT Ras-related protein Rab-11A (Rab-11)
 sp|Q5R9M7|RB11A_PONPY Ras-related protein Rab-11A
 sp|Q52NJ1|RB11A_PIG Ras-related protein Rab-11A
 sp|P62492|RB11A_MOUSE Ras-related protein Rab-11A (Rab-11)
 sp|P62491|RB11A_HUMAN Ras-related protein Rab-11A (Rab-11) (YL8)
 sp|P62490|RB11A_CANFA Ras-related protein Rab-11A (Rab-11)
          Length = 216

 Score =  308 bits (789), Expect = 1e-83
 Identities = 153/176 (86%), Positives = 167/176 (94%)
 Frame = +3

Query: 27  RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
           RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4   RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63

Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
           IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVG
Sbjct: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 123

Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR 554
           NKSDLRHLR+VP ++A+AFAE++ +SFIETSAL++TNVE AF  IL+ IYRIVSQ+
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179

>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6
          Length = 216

 Score =  295 bits (754), Expect = 2e-79
 Identities = 155/212 (73%), Positives = 175/212 (82%), Gaps = 1/212 (0%)
 Frame = +3

Query: 30  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
           DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ ++GKTIKAQI
Sbjct: 6   DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQI 65

Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
           WDTAGQERYRAITSAYYRGAVGALLVYDI K  T+ENVERWLKELRDHADSNIVIMLVGN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGN 125

Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 569
           KSDL+HLR V  E A+AF ER  +SFIETSALE+TNVE AF QIL+ IY IVS++  ++S
Sbjct: 126 KSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKK-VLDS 184

Query: 570 APIGHKLNTQPIIPSLDDTMRNSNGKK-NCCS 662
                K+     +  +D+   +   KK  CCS
Sbjct: 185 EDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216

>sp|P40393|RIC2_ORYSA Ras-related protein RIC2
          Length = 217

 Score =  288 bits (737), Expect = 2e-77
 Identities = 146/211 (69%), Positives = 170/211 (80%)
 Frame = +3

Query: 30  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
           +D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ ++GK +KAQI
Sbjct: 8   EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQI 67

Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
           WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH D NIV+MLVGN
Sbjct: 68  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGN 127

Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 569
           KSDLRHL +V  ++ KAFAER ++ F+ETSALE+TNVE+AF ++L+ IYRIVS+R     
Sbjct: 128 KSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAG 187

Query: 570 APIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
              G        I   DD      G   CCS
Sbjct: 188 DDAGSGPGKGEKINIKDDVSAVKKG--GCCS 216

>sp|O04486|RB11C_ARATH Ras-related protein Rab11C
          Length = 217

 Score =  286 bits (733), Expect = 5e-77
 Identities = 150/216 (69%), Positives = 174/216 (80%), Gaps = 2/216 (0%)
 Frame = +3

Query: 21  MAR--DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKT 194
           MAR  D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++ +EG+T
Sbjct: 1   MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60

Query: 195 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVI 374
           +KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVI
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 120

Query: 375 MLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR 554
           ML+GNK+DL+HLR+V  EDA+++AE+  +SFIETSALEA NVE AF  ILS +YRI+S++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKK 180

Query: 555 PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
             + S       N +            SN KK CCS
Sbjct: 181 -SISSDQTTANANIKEGQTIDVAATSESNAKKPCCS 215

>sp|Q39222|RB11B_ARATH Ras-related protein Rab11
          Length = 216

 Score =  286 bits (731), Expect = 8e-77
 Identities = 143/217 (65%), Positives = 174/217 (80%), Gaps = 6/217 (2%)
 Frame = +3

Query: 30  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
           +D+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATR++ ++GK +KAQI
Sbjct: 7   EDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQI 66

Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
           WDTAGQERYRAITSAYYRGAVGALLVYD+ + AT+ENV+RWLKEL++H D NIV+MLVGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGN 126

Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR----- 554
           KSDLRHL +VP ED K++AE+ ++ F+ETSALEATNVEDAF ++L+ IYRI S++     
Sbjct: 127 KSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAG 186

Query: 555 -PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
                S P G K+  +  + +L         K  CCS
Sbjct: 187 EDGNASVPKGEKIEVKNDVSALK--------KLGCCS 215

>sp|Q01111|YPT3_NICPL Ras-related protein YPT3
          Length = 218

 Score =  285 bits (729), Expect = 1e-76
 Identities = 146/212 (68%), Positives = 172/212 (81%), Gaps = 1/212 (0%)
 Frame = +3

Query: 30  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
           DDEYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+S+ I+ K IKAQI
Sbjct: 7   DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQI 66

Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
           WDTAGQERYRAITSAYYRGAVGALLVYD+ +H TYENV RWLKELRDH D NIV+ML+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGN 126

Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 569
           KSDLRHL +V  ++AK  AER  + F+ETSALEATNVE+AF + L+ IYRIVS++  +E+
Sbjct: 127 KSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKK-AVEA 185

Query: 570 APIGHKLNTQPIIPSLDDTMRNSNGKK-NCCS 662
              G   +  P   +++     S+ KK  CCS
Sbjct: 186 GDEGATSSAPPKGETINIKDEGSSWKKFGCCS 217

>sp|Q96283|RB11A_ARATH Ras-related protein Rab11A
          Length = 217

 Score =  285 bits (729), Expect = 1e-76
 Identities = 147/213 (69%), Positives = 169/213 (79%), Gaps = 2/213 (0%)
 Frame = +3

Query: 30  DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
           D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+  +EGKTIKAQI
Sbjct: 6   DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQI 65

Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
           WDTAGQERYRAITSAYYRGAVGALLVYDI K  T++NV RWL+ELRDHADSNIVIM+ GN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN 125

Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR--PPM 563
           KSDL HLRSV  ED ++ AE+  +SF+ETSALEATNVE AF  IL  IY I+S++     
Sbjct: 126 KSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQ 185

Query: 564 ESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
           E+A     +  Q    ++DDT  +   K+ CCS
Sbjct: 186 EAAAANSAIPGQGTTINVDDT--SGGAKRACCS 216

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,101,772
Number of Sequences: 369166
Number of extensions: 1867437
Number of successful extensions: 6902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6463
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10000523555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00571

  1. Dr_sW_002_B20
  2. Dr_sW_014_N03
  3. Dr_sW_019_E05
  4. Dr_sW_010_B19