Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_N03
(829 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B 313 4e-85
sp|O35509|RB11B_RAT Ras-related protein Rab-11B >gi|3825893... 313 4e-85
sp|P22129|RB11B_DISOM Ras-related protein Rab-11B (ORA3) 312 6e-85
sp|P62494|RB11A_RAT Ras-related protein Rab-11A (Rab-11) (2... 308 1e-83
sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 295 1e-79
sp|P40393|RIC2_ORYSA Ras-related protein RIC2 288 1e-77
sp|O04486|RB11C_ARATH Ras-related protein Rab11C 286 4e-77
sp|Q39222|RB11B_ARATH Ras-related protein Rab11 286 6e-77
sp|Q01111|YPT3_NICPL Ras-related protein YPT3 285 1e-76
sp|Q96283|RB11A_ARATH Ras-related protein Rab11A 285 1e-76
>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B
Length = 218
Score = 313 bits (802), Expect = 4e-85
Identities = 162/215 (75%), Positives = 182/215 (84%), Gaps = 4/215 (1%)
Frame = +3
Query: 27 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVG
Sbjct: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 123
Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPME 566
NKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF IL+ IYRIVSQ+ +
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 183
Query: 567 SA----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 659
A G+ + + P+ D N K CC
Sbjct: 184 RAAHDESPGNNVVDISVPPTTDGQRPN---KLQCC 215
>sp|O35509|RB11B_RAT Ras-related protein Rab-11B
sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B (GTP-binding protein YPT3)
Length = 218
Score = 313 bits (802), Expect = 4e-85
Identities = 162/215 (75%), Positives = 182/215 (84%), Gaps = 4/215 (1%)
Frame = +3
Query: 27 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVG
Sbjct: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 123
Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPME 566
NKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF IL+ IYRIVSQ+ +
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 183
Query: 567 SA----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 659
A G+ + + P+ D N K CC
Sbjct: 184 RAAHDESPGNNVVDISVPPTTDGQKPN---KLQCC 215
>sp|P22129|RB11B_DISOM Ras-related protein Rab-11B (ORA3)
Length = 218
Score = 312 bits (800), Expect = 6e-85
Identities = 162/216 (75%), Positives = 183/216 (84%), Gaps = 5/216 (2%)
Frame = +3
Query: 27 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHAD+NIVIMLVG
Sbjct: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVG 123
Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQ----- 551
NKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF IL+ IYRIVSQ
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISD 183
Query: 552 RPPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCC 659
R + +P G+ + + P+ D N K CC
Sbjct: 184 RSAHDESP-GNNVVDISVPPTTDGQKSN---KLQCC 215
>sp|P62494|RB11A_RAT Ras-related protein Rab-11A (Rab-11) (24KG)
sp|P62493|RB11A_RABIT Ras-related protein Rab-11A (Rab-11)
sp|Q5R9M7|RB11A_PONPY Ras-related protein Rab-11A
sp|Q52NJ1|RB11A_PIG Ras-related protein Rab-11A
sp|P62492|RB11A_MOUSE Ras-related protein Rab-11A (Rab-11)
sp|P62491|RB11A_HUMAN Ras-related protein Rab-11A (Rab-11) (YL8)
sp|P62490|RB11A_CANFA Ras-related protein Rab-11A (Rab-11)
Length = 216
Score = 308 bits (789), Expect = 1e-83
Identities = 153/176 (86%), Positives = 167/176 (94%)
Frame = +3
Query: 27 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQ 206
RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQ
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 207 IWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVG 386
IWDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVG
Sbjct: 64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 123
Query: 387 NKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR 554
NKSDLRHLR+VP ++A+AFAE++ +SFIETSAL++TNVE AF IL+ IYRIVSQ+
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6
Length = 216
Score = 295 bits (754), Expect = 1e-79
Identities = 155/212 (73%), Positives = 175/212 (82%), Gaps = 1/212 (0%)
Frame = +3
Query: 30 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ ++GKTIKAQI
Sbjct: 6 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQI 65
Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
WDTAGQERYRAITSAYYRGAVGALLVYDI K T+ENVERWLKELRDHADSNIVIMLVGN
Sbjct: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGN 125
Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 569
KSDL+HLR V E A+AF ER +SFIETSALE+TNVE AF QIL+ IY IVS++ ++S
Sbjct: 126 KSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKK-VLDS 184
Query: 570 APIGHKLNTQPIIPSLDDTMRNSNGKK-NCCS 662
K+ + +D+ + KK CCS
Sbjct: 185 EDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216
>sp|P40393|RIC2_ORYSA Ras-related protein RIC2
Length = 217
Score = 288 bits (737), Expect = 1e-77
Identities = 146/211 (69%), Positives = 170/211 (80%)
Frame = +3
Query: 30 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
+D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ ++GK +KAQI
Sbjct: 8 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQI 67
Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH D NIV+MLVGN
Sbjct: 68 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGN 127
Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 569
KSDLRHL +V ++ KAFAER ++ F+ETSALE+TNVE+AF ++L+ IYRIVS+R
Sbjct: 128 KSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAG 187
Query: 570 APIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
G I DD G CCS
Sbjct: 188 DDAGSGPGKGEKINIKDDVSAVKKG--GCCS 216
>sp|O04486|RB11C_ARATH Ras-related protein Rab11C
Length = 217
Score = 286 bits (733), Expect = 4e-77
Identities = 150/216 (69%), Positives = 174/216 (80%), Gaps = 2/216 (0%)
Frame = +3
Query: 21 MAR--DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKT 194
MAR D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++ +EG+T
Sbjct: 1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
Query: 195 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVI 374
+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHADSNIVI
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 120
Query: 375 MLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR 554
ML+GNK+DL+HLR+V EDA+++AE+ +SFIETSALEA NVE AF ILS +YRI+S++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKK 180
Query: 555 PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
+ S N + SN KK CCS
Sbjct: 181 -SISSDQTTANANIKEGQTIDVAATSESNAKKPCCS 215
>sp|Q39222|RB11B_ARATH Ras-related protein Rab11
Length = 216
Score = 286 bits (731), Expect = 6e-77
Identities = 143/217 (65%), Positives = 174/217 (80%), Gaps = 6/217 (2%)
Frame = +3
Query: 30 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
+D+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATR++ ++GK +KAQI
Sbjct: 7 EDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQI 66
Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
WDTAGQERYRAITSAYYRGAVGALLVYD+ + AT+ENV+RWLKEL++H D NIV+MLVGN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGN 126
Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR----- 554
KSDLRHL +VP ED K++AE+ ++ F+ETSALEATNVEDAF ++L+ IYRI S++
Sbjct: 127 KSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAG 186
Query: 555 -PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
S P G K+ + + +L K CCS
Sbjct: 187 EDGNASVPKGEKIEVKNDVSALK--------KLGCCS 215
>sp|Q01111|YPT3_NICPL Ras-related protein YPT3
Length = 218
Score = 285 bits (729), Expect = 1e-76
Identities = 146/212 (68%), Positives = 172/212 (81%), Gaps = 1/212 (0%)
Frame = +3
Query: 30 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
DDEYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+S+ I+ K IKAQI
Sbjct: 7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQI 66
Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
WDTAGQERYRAITSAYYRGAVGALLVYD+ +H TYENV RWLKELRDH D NIV+ML+GN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGN 126
Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 569
KSDLRHL +V ++AK AER + F+ETSALEATNVE+AF + L+ IYRIVS++ +E+
Sbjct: 127 KSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKK-AVEA 185
Query: 570 APIGHKLNTQPIIPSLDDTMRNSNGKK-NCCS 662
G + P +++ S+ KK CCS
Sbjct: 186 GDEGATSSAPPKGETINIKDEGSSWKKFGCCS 217
>sp|Q96283|RB11A_ARATH Ras-related protein Rab11A
Length = 217
Score = 285 bits (729), Expect = 1e-76
Identities = 147/213 (69%), Positives = 169/213 (79%), Gaps = 2/213 (0%)
Frame = +3
Query: 30 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 209
D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+ +EGKTIKAQI
Sbjct: 6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQI 65
Query: 210 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 389
WDTAGQERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVIM+ GN
Sbjct: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGN 125
Query: 390 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR--PPM 563
KSDL HLRSV ED ++ AE+ +SF+ETSALEATNVE AF IL IY I+S++
Sbjct: 126 KSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQ 185
Query: 564 ESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 662
E+A + Q ++DDT + K+ CCS
Sbjct: 186 EAAAANSAIPGQGTTINVDDT--SGGAKRACCS 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,912,688
Number of Sequences: 369166
Number of extensions: 1659130
Number of successful extensions: 6579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6140
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)