Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B20
(736 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B 311 1e-84
sp|O35509|RB11B_RAT Ras-related protein Rab-11B >gi|3825893... 311 1e-84
sp|P22129|RB11B_DISOM Ras-related protein Rab-11B (ORA3) 310 2e-84
sp|P62494|RB11A_RAT Ras-related protein Rab-11A (Rab-11) (2... 306 4e-83
sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 297 2e-80
sp|P40393|RIC2_ORYSA Ras-related protein RIC2 288 1e-77
sp|Q96283|RB11A_ARATH Ras-related protein Rab11A 287 2e-77
sp|O04486|RB11C_ARATH Ras-related protein Rab11C 286 4e-77
sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C 286 4e-77
sp|Q01111|YPT3_NICPL Ras-related protein YPT3 286 5e-77
>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B
Length = 218
Score = 311 bits (797), Expect = 1e-84
Identities = 161/214 (75%), Positives = 181/214 (84%), Gaps = 4/214 (1%)
Frame = +2
Query: 17 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 196
DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 197 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 376
WDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 377 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 556
KSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF IL+ IYRIVSQ+ +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 557 A----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 646
A G+ + + P+ D N K CC
Sbjct: 185 AAHDESPGNNVVDISVPPTTDGQRPN---KLQCC 215
>sp|O35509|RB11B_RAT Ras-related protein Rab-11B
sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B (GTP-binding protein YPT3)
Length = 218
Score = 311 bits (797), Expect = 1e-84
Identities = 161/214 (75%), Positives = 181/214 (84%), Gaps = 4/214 (1%)
Frame = +2
Query: 17 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 196
DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 197 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 376
WDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 377 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 556
KSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF IL+ IYRIVSQ+ +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 557 A----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 646
A G+ + + P+ D N K CC
Sbjct: 185 AAHDESPGNNVVDISVPPTTDGQKPN---KLQCC 215
>sp|P22129|RB11B_DISOM Ras-related protein Rab-11B (ORA3)
Length = 218
Score = 310 bits (795), Expect = 2e-84
Identities = 161/215 (74%), Positives = 182/215 (84%), Gaps = 5/215 (2%)
Frame = +2
Query: 17 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 196
DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 197 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 376
WDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHAD+NIVIMLVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGN 124
Query: 377 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQ-----R 541
KSDLRHLR+VP ++A+AFAE++N+SFIETSAL++TNVE+AF IL+ IYRIVSQ R
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDR 184
Query: 542 PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCC 646
+ +P G+ + + P+ D N K CC
Sbjct: 185 SAHDESP-GNNVVDISVPPTTDGQKSN---KLQCC 215
>sp|P62494|RB11A_RAT Ras-related protein Rab-11A (Rab-11) (24KG)
sp|P62493|RB11A_RABIT Ras-related protein Rab-11A (Rab-11)
sp|Q5R9M7|RB11A_PONPY Ras-related protein Rab-11A
sp|Q52NJ1|RB11A_PIG Ras-related protein Rab-11A
sp|P62492|RB11A_MOUSE Ras-related protein Rab-11A (Rab-11)
sp|P62491|RB11A_HUMAN Ras-related protein Rab-11A (Rab-11) (YL8)
sp|P62490|RB11A_CANFA Ras-related protein Rab-11A (Rab-11)
Length = 216
Score = 306 bits (784), Expect = 4e-83
Identities = 152/175 (86%), Positives = 166/175 (94%)
Frame = +2
Query: 17 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 196
DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS+ ++GKTIKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 197 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 376
WDTAGQERYRAITSAYYRGAVGALLVYDI KH TYENVERWLKELRDHADSNIVIMLVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 377 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR 541
KSDLRHLR+VP ++A+AFAE++ +SFIETSAL++TNVE AF IL+ IYRIVSQ+
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQK 179
>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6
Length = 216
Score = 297 bits (761), Expect = 2e-80
Identities = 156/215 (72%), Positives = 177/215 (82%), Gaps = 1/215 (0%)
Frame = +2
Query: 8 HEGDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIK 187
H+ DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ ++GKTIK
Sbjct: 3 HKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIK 62
Query: 188 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIML 367
AQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T+ENVERWLKELRDHADSNIVIML
Sbjct: 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIML 122
Query: 368 VGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPP 547
VGNKSDL+HLR V E A+AF ER +SFIETSALE+TNVE AF QIL+ IY IVS++
Sbjct: 123 VGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKK-V 181
Query: 548 MESAPIGHKLNTQPIIPSLDDTMRNSNGKK-NCCS 649
++S K+ + +D+ + KK CCS
Sbjct: 182 LDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216
>sp|P40393|RIC2_ORYSA Ras-related protein RIC2
Length = 217
Score = 288 bits (737), Expect = 1e-77
Identities = 146/211 (69%), Positives = 170/211 (80%)
Frame = +2
Query: 17 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 196
+D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ ++GK +KAQI
Sbjct: 8 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQI 67
Query: 197 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 376
WDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH D NIV+MLVGN
Sbjct: 68 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGN 127
Query: 377 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 556
KSDLRHL +V ++ KAFAER ++ F+ETSALE+TNVE+AF ++L+ IYRIVS+R
Sbjct: 128 KSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAG 187
Query: 557 APIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 649
G I DD G CCS
Sbjct: 188 DDAGSGPGKGEKINIKDDVSAVKKG--GCCS 216
>sp|Q96283|RB11A_ARATH Ras-related protein Rab11A
Length = 217
Score = 287 bits (734), Expect = 2e-77
Identities = 148/216 (68%), Positives = 170/216 (78%), Gaps = 2/216 (0%)
Frame = +2
Query: 8 HEGDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIK 187
H D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+ +EGKTIK
Sbjct: 3 HRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIK 62
Query: 188 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIML 367
AQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T++NV RWL+ELRDHADSNIVIM+
Sbjct: 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMM 122
Query: 368 VGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQR-- 541
GNKSDL HLRSV ED ++ AE+ +SF+ETSALEATNVE AF IL IY I+S++
Sbjct: 123 AGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKAL 182
Query: 542 PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 649
E+A + Q ++DDT + K+ CCS
Sbjct: 183 AAQEAAAANSAIPGQGTTINVDDT--SGGAKRACCS 216
>sp|O04486|RB11C_ARATH Ras-related protein Rab11C
Length = 217
Score = 286 bits (732), Expect = 4e-77
Identities = 147/211 (69%), Positives = 171/211 (81%)
Frame = +2
Query: 17 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIKAQI 196
D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++ +EG+T+KAQI
Sbjct: 6 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQI 65
Query: 197 WDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIMLVGN 376
WDTAGQERYRAITSAYYRGA+GALLVYD+ K T+ENV RWLKELRDHADSNIVIML+GN
Sbjct: 66 WDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGN 125
Query: 377 KSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPPMES 556
K+DL+HLR+V EDA+++AE+ +SFIETSALEA NVE AF ILS +YRI+S++ + S
Sbjct: 126 KTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKK-SISS 184
Query: 557 APIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 649
N + SN KK CCS
Sbjct: 185 DQTTANANIKEGQTIDVAATSESNAKKPCCS 215
>sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C
Length = 216
Score = 286 bits (732), Expect = 4e-77
Identities = 146/215 (67%), Positives = 172/215 (80%), Gaps = 1/215 (0%)
Frame = +2
Query: 8 HEGDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIK 187
H D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++ +EGKT+K
Sbjct: 3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK 62
Query: 188 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIML 367
AQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T++NV+RWL+ELRDHADSNIVIM+
Sbjct: 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMM 122
Query: 368 VGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRP- 544
GNKSDL HLR+V +D A +E+ +SF+ETSALEATN+E AF IL+ IY IVS++
Sbjct: 123 AGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKAL 182
Query: 545 PMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 649
+ A G + Q ++ DT + N KK CCS
Sbjct: 183 AAQEATAGASVPGQGTTINVADT--SGNTKKGCCS 215
>sp|Q01111|YPT3_NICPL Ras-related protein YPT3
Length = 218
Score = 286 bits (731), Expect = 5e-77
Identities = 146/215 (67%), Positives = 173/215 (80%), Gaps = 1/215 (0%)
Frame = +2
Query: 8 HEGDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVTIEGKTIK 187
+ DDEYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFAT+S+ I+ K IK
Sbjct: 4 YRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIK 63
Query: 188 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATYENVERWLKELRDHADSNIVIML 367
AQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H TYENV RWLKELRDH D NIV+ML
Sbjct: 64 AQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVML 123
Query: 368 VGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEATNVEDAFIQILSAIYRIVSQRPP 547
+GNKSDLRHL +V ++AK AER + F+ETSALEATNVE+AF + L+ IYRIVS++
Sbjct: 124 IGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKK-A 182
Query: 548 MESAPIGHKLNTQPIIPSLDDTMRNSNGKK-NCCS 649
+E+ G + P +++ S+ KK CCS
Sbjct: 183 VEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCS 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,377,621
Number of Sequences: 369166
Number of extensions: 1461633
Number of successful extensions: 6345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5908
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)