Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B19
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B 242 1e-63
sp|O35509|RB11B_RAT Ras-related protein Rab-11B >gi|3825893... 242 1e-63
sp|P22129|RB11B_DISOM Ras-related protein Rab-11B (ORA3) 241 2e-63
sp|P62494|RB11A_RAT Ras-related protein Rab-11A (Rab-11) (2... 237 3e-62
sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 228 1e-59
sp|P40393|RIC2_ORYSA Ras-related protein RIC2 223 4e-58
sp|Q96283|RB11A_ARATH Ras-related protein Rab11A 223 7e-58
sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C 222 9e-58
sp|O04486|RB11C_ARATH Ras-related protein Rab11C 222 1e-57
sp|Q39222|RB11B_ARATH Ras-related protein Rab11 220 3e-57
>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B
Length = 218
Score = 242 bits (617), Expect = 1e-63
Identities = 126/179 (70%), Positives = 146/179 (81%), Gaps = 4/179 (2%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATRS+ ++GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI KH TY
Sbjct: 40 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY 99
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENVERWLKELRDHADSNIVIMLVGNKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++T
Sbjct: 100 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 159
Query: 361 NVEDAFIQILSAIYRIVSQRPPMESA----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 525
NVE+AF IL+ IYRIVSQ+ + A G+ + + P+ D N K CC
Sbjct: 160 NVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQRPN---KLQCC 215
>sp|O35509|RB11B_RAT Ras-related protein Rab-11B
sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B (GTP-binding protein YPT3)
Length = 218
Score = 242 bits (617), Expect = 1e-63
Identities = 126/179 (70%), Positives = 146/179 (81%), Gaps = 4/179 (2%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATRS+ ++GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI KH TY
Sbjct: 40 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY 99
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENVERWLKELRDHADSNIVIMLVGNKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++T
Sbjct: 100 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 159
Query: 361 NVEDAFIQILSAIYRIVSQRPPMESA----PIGHKLNTQPIIPSLDDTMRNSNGKKNCC 525
NVE+AF IL+ IYRIVSQ+ + A G+ + + P+ D N K CC
Sbjct: 160 NVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPN---KLQCC 215
>sp|P22129|RB11B_DISOM Ras-related protein Rab-11B (ORA3)
Length = 218
Score = 241 bits (615), Expect = 2e-63
Identities = 126/180 (70%), Positives = 147/180 (81%), Gaps = 5/180 (2%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATRS+ ++GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI KH TY
Sbjct: 40 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY 99
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENVERWLKELRDHAD+NIVIMLVGNKSDLRHLR+VP ++A+AFAE++N+SFIETSAL++T
Sbjct: 100 ENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 159
Query: 361 NVEDAFIQILSAIYRIVSQ-----RPPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCC 525
NVE+AF IL+ IYRIVSQ R + +P G+ + + P+ D N K CC
Sbjct: 160 NVEEAFKNILTEIYRIVSQKQISDRSAHDESP-GNNVVDISVPPTTDGQKSN---KLQCC 215
>sp|P62494|RB11A_RAT Ras-related protein Rab-11A (Rab-11) (24KG)
sp|P62493|RB11A_RABIT Ras-related protein Rab-11A (Rab-11)
sp|Q5R9M7|RB11A_PONPY Ras-related protein Rab-11A
sp|Q52NJ1|RB11A_PIG Ras-related protein Rab-11A
sp|P62492|RB11A_MOUSE Ras-related protein Rab-11A (Rab-11)
sp|P62491|RB11A_HUMAN Ras-related protein Rab-11A (Rab-11) (YL8)
sp|P62490|RB11A_CANFA Ras-related protein Rab-11A (Rab-11)
Length = 216
Score = 237 bits (604), Expect = 3e-62
Identities = 117/140 (83%), Positives = 131/140 (93%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATRS+ ++GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI KH TY
Sbjct: 40 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTY 99
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENVERWLKELRDHADSNIVIMLVGNKSDLRHLR+VP ++A+AFAE++ +SFIETSAL++T
Sbjct: 100 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST 159
Query: 361 NVEDAFIQILSAIYRIVSQR 420
NVE AF IL+ IYRIVSQ+
Sbjct: 160 NVEAAFQTILTEIYRIVSQK 179
>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6
Length = 216
Score = 228 bits (582), Expect = 1e-59
Identities = 122/177 (68%), Positives = 140/177 (79%), Gaps = 1/177 (0%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATRS+ ++GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T+
Sbjct: 41 SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTF 100
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENVERWLKELRDHADSNIVIMLVGNKSDL+HLR V E A+AF ER +SFIETSALE+T
Sbjct: 101 ENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALEST 160
Query: 361 NVEDAFIQILSAIYRIVSQRPPMESAPIGHKLNTQPIIPSLDDTMRNSNGKK-NCCS 528
NVE AF QIL+ IY IVS++ ++S K+ + +D+ + KK CCS
Sbjct: 161 NVEKAFQQILTEIYHIVSKK-VLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216
>sp|P40393|RIC2_ORYSA Ras-related protein RIC2
Length = 217
Score = 223 bits (569), Expect = 4e-58
Identities = 114/176 (64%), Positives = 135/176 (76%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATRS+ ++GK +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+
Sbjct: 43 SKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTF 102
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENVERWLKELRDH D NIV+MLVGNKSDLRHL +V ++ KAFAER ++ F+ETSALE+T
Sbjct: 103 ENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALEST 162
Query: 361 NVEDAFIQILSAIYRIVSQRPPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 528
NVE+AF ++L+ IYRIVS+R G I DD G CCS
Sbjct: 163 NVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINIKDDVSAVKKG--GCCS 216
>sp|Q96283|RB11A_ARATH Ras-related protein Rab11A
Length = 217
Score = 223 bits (567), Expect = 7e-58
Identities = 116/178 (65%), Positives = 136/178 (76%), Gaps = 2/178 (1%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATR+ +EGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T+
Sbjct: 41 SKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF 100
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
+NV RWL+ELRDHADSNIVIM+ GNKSDL HLRSV ED ++ AE+ +SF+ETSALEAT
Sbjct: 101 DNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEAT 160
Query: 361 NVEDAFIQILSAIYRIVSQR--PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 528
NVE AF IL IY I+S++ E+A + Q ++DDT + K+ CCS
Sbjct: 161 NVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDT--SGGAKRACCS 216
>sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C
Length = 216
Score = 222 bits (566), Expect = 9e-58
Identities = 114/177 (64%), Positives = 138/177 (77%), Gaps = 1/177 (0%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATR++ +EGKT+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K T+
Sbjct: 41 SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF 100
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
+NV+RWL+ELRDHADSNIVIM+ GNKSDL HLR+V +D A +E+ +SF+ETSALEAT
Sbjct: 101 DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEAT 160
Query: 361 NVEDAFIQILSAIYRIVSQRP-PMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 528
N+E AF IL+ IY IVS++ + A G + Q ++ DT + N KK CCS
Sbjct: 161 NIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADT--SGNTKKGCCS 215
>sp|O04486|RB11C_ARATH Ras-related protein Rab11C
Length = 217
Score = 222 bits (565), Expect = 1e-57
Identities = 114/176 (64%), Positives = 137/176 (77%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATR++ +EG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K T+
Sbjct: 41 SKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTF 100
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENV RWLKELRDHADSNIVIML+GNK+DL+HLR+V EDA+++AE+ +SFIETSALEA
Sbjct: 101 ENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEAL 160
Query: 361 NVEDAFIQILSAIYRIVSQRPPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNCCS 528
NVE AF ILS +YRI+S++ + S N + SN KK CCS
Sbjct: 161 NVEKAFQTILSEVYRIISKK-SISSDQTTANANIKEGQTIDVAATSESNAKKPCCS 215
>sp|Q39222|RB11B_ARATH Ras-related protein Rab11
Length = 216
Score = 220 bits (561), Expect = 3e-57
Identities = 111/182 (60%), Positives = 139/182 (76%), Gaps = 6/182 (3%)
Frame = +1
Query: 1 SKSTIGVEFATRSVTIEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIVKHATY 180
SKSTIGVEFATR++ ++GK +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ + AT+
Sbjct: 42 SKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATF 101
Query: 181 ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRSVpreDAKAFAERHNISFIETSALEAT 360
ENV+RWLKEL++H D NIV+MLVGNKSDLRHL +VP ED K++AE+ ++ F+ETSALEAT
Sbjct: 102 ENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEAT 161
Query: 361 NVEDAFIQILSAIYRIVSQR------PPMESAPIGHKLNTQPIIPSLDDTMRNSNGKKNC 522
NVEDAF ++L+ IYRI S++ S P G K+ + + +L K C
Sbjct: 162 NVEDAFAEVLTQIYRITSKKQVEAGEDGNASVPKGEKIEVKNDVSALK--------KLGC 213
Query: 523 CS 528
CS
Sbjct: 214 CS 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,555,834
Number of Sequences: 369166
Number of extensions: 1617189
Number of successful extensions: 4587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4403
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)