DrC_00567
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00567 (1818 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P52172|SRP_DROME Box A-binding factor (ABF) (Serpent pro... 45 5e-04 sp|Q10669|SUR2_CAEEL Protein sur-2 40 0.022 sp|P34291|PQN8_CAEEL Protein pqn-8 40 0.022 sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B 39 0.050 sp|P57313|MURD_BUCAI UDP-N-acetylmuramoylalanine--D-glutama... 39 0.065 sp|Q873Y3|PACC_CANDU pH-response transcription factor pacC/... 37 0.25 sp|Q01593|ABI3_ARATH Abscisic acid-insensitive protein 3 36 0.32 sp|Q03656|SKY1_YEAST Serine/threonine-protein kinase SKY1 (... 36 0.32 sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim)... 34 1.2 sp|P21657|DAL81_YEAST Transcriptional activator protein DAL... 34 1.6
>sp|P52172|SRP_DROME Box A-binding factor (ABF) (Serpent protein) (GATA-binding factor-B) (Transcription factor GATA-B) (dGATA-B) Length = 1264 Score = 45.4 bits (106), Expect = 5e-04 Identities = 33/118 (27%), Positives = 50/118 (42%) Frame = +2 Query: 407 PNTNYKLSDCISNNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSI 586 PN+NY++S HQ + + SP P + Q NN N N SSI Sbjct: 980 PNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIFNTPSPTHQLHNNN-----NNNNNSSI 1034 Query: 587 FSGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSST 760 F+ N N + + N++ Q ++ ++ S S S H L + Q +PNS T Sbjct: 1035 FNNNNNN-----NSSSNENNNKLIQKYLQAQQLSSSSNSGSTSDHQLLA-QLLPNSIT 1086
>sp|Q10669|SUR2_CAEEL Protein sur-2 Length = 1587 Score = 40.0 bits (92), Expect = 0.022 Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 31/127 (24%) Frame = +2 Query: 1151 PNPQQNLGSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVT----------- 1297 P PQQ+ S QH + + ++ T Q SNHP Q + + + Sbjct: 1439 PPPQQHSSSLQHHLQHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIPNMSMHQQMGPQ 1498 Query: 1298 ---ATGAHPTAPHPYAMAHQGGG-----------LQQFPTQLHLMQQQMHNFPPS----- 1420 A HP+ P + G G QQ P +H M M N P Sbjct: 1499 YPGAVFHHPSGPVGHVPMQYGMGHHMQQHPHLPHHQQMPAPMHTMNPMMQNMTPQQQYLY 1558 Query: 1421 -YQLQEH 1438 QLQ+H Sbjct: 1559 MQQLQQH 1565
>sp|P34291|PQN8_CAEEL Protein pqn-8 Length = 401 Score = 40.0 bits (92), Expect = 0.022 Identities = 43/161 (26%), Positives = 62/161 (38%) Frame = +2 Query: 410 NTNYKLSDCISNNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSIF 589 N N S NN N+ + P G SN Q N+ + + N NG + Sbjct: 177 NQNLGASSGFFNNQNQQNSQ--QNQVNGPTSGFSNQQTSNQ--NSGFFNNQNQQNGQNFG 232 Query: 590 SGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQ 769 + N N VN +S ++ +NQ QQ F N + +Q+ SN + VQ N+ NQ Sbjct: 233 NSGNQNGVNPYSGAFSNGQNQNQQGFF---GNNQNNQQNSNGQ-----VQGSQNNQIWNQ 284 Query: 770 SQVMLSKISDSDNPAILSAMTMPNICCFPPVYMNNFHNFMP 892 +Q PNI F P +N+ F P Sbjct: 285 NQ-------------------NPNILPFGPNLVNSNTQFGP 306
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B Length = 1669 Score = 38.9 bits (89), Expect = 0.050 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 15/140 (10%) Frame = +2 Query: 1043 RTQNYVPNFV---GKSQDEGLDVEKSTKLANNTAQINRQPNPQQNLGSSNRANQHQAQQQ 1213 RT NY N G++ D +E+ +L AQ +Q + SS+ + Q+ + Sbjct: 298 RTANYERNLSLDEGRAGDSRQSLEELKQLR---AQAQQQSLLNNSSSSSSNSQVEQSMRS 354 Query: 1214 SVSNDARFLTFH-----QHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQG-GGLQQFPT 1375 ++ + R L + Q+S H +QNN+ A G + A+A+ G G QQ P Sbjct: 355 TIEHHMRSLDRNLPLELQYSRHRFQNNLNAVAAAGGGGGNSSTGNAVANSGTSGSQQPPM 414 Query: 1376 QL------HLMQQQMHNFPP 1417 L + QQ + N PP Sbjct: 415 PLSSEFREQIRQQLLGNIPP 434
>sp|P57313|MURD_BUCAI UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 440 Score = 38.5 bits (88), Expect = 0.065 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Frame = +2 Query: 569 PNGSSIFSGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIP 748 PNG + ++ N + +++++S IHS++ K S T+ S + +CS + P Sbjct: 190 PNGFQQYKNTKLSVYNQAEICIINSNDKIEKSLIHSKNKKWISFGTNRSDYRICSKSNDP 249 Query: 749 -----NSSTMNQSQVMLSKISDSDNPAILSAMTMPNICCFP 856 N +N S+++L + +N IL ++ + + FP Sbjct: 250 ILFFKNKKILNTSEILLYGYHNYNN--ILVSLAISDAMQFP 288
>sp|Q873Y3|PACC_CANDU pH-response transcription factor pacC/RIM101 Length = 666 Score = 36.6 bits (83), Expect = 0.25 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Frame = +2 Query: 1076 KSQDEGLDVEKSTKLANNTAQINRQPNPQQNLGSSNRANQHQAQQQSVSNDARFL--TFH 1249 KS +DV+ +T ++ T+ + N N S+ +Q A + T + Sbjct: 33 KSPSSDIDVDNATSPSSFTSSQSPHINAMGNSPHSSFTSQSAANSPITDAKQHLVKTTTN 92 Query: 1250 QHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQQQMHNFPPSYQL 1429 +H + ++ A+ + TAP Y QQ PTQLH Q++N PSY L Sbjct: 93 EHKPAAFTPSVGQ-QPASQTNTTAPQSYTQP-----AQQLPTQLHPSLNQVYNNQPSYYL 146 Query: 1430 QE 1435 + Sbjct: 147 HQ 148
>sp|Q01593|ABI3_ARATH Abscisic acid-insensitive protein 3 Length = 720 Score = 36.2 bits (82), Expect = 0.32 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 18/172 (10%) Frame = +2 Query: 398 ISDPNTNYKLSDCISNNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNP--QYFSFNIP 571 +SDP Y + + L +L S P PPP S QQF P QY F P Sbjct: 364 VSDPGFGYMPAPNYPPQPEFL--PLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGDP 421 Query: 572 NGSSIFSGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQK---------TSNSKHN 724 G F+G NMN + + + + S + KE +K + + +HN Sbjct: 422 TG---FNGYNMNPY-QYPYVPAGQMRDQRLLRLCSSATKEARKKRMARQRRFLSHHHRHN 477 Query: 725 LCSVQSIPNSSTMNQSQV--MLSKISDSDNPAILSA-----MTMPNICCFPP 859 + + N++ NQ+Q+ + ++ NP +A M PN+ PP Sbjct: 478 --NNNNNNNNNQQNQTQIGETCAAVAPQLNPVATTATGGTWMYWPNVPAVPP 527
>sp|Q03656|SKY1_YEAST Serine/threonine-protein kinase SKY1 (SRPK) Length = 742 Score = 36.2 bits (82), Expect = 0.32 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%) Frame = +2 Query: 461 NTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGS-SIFSGCNMNQVNDFSDIGT 637 +T I S PL P SN ++ + SF+ +G+ +I S N N +N+ I Sbjct: 382 HTIITGSQPLPSPISSSNFFEMRAHFCGSSHNSFSSVSGNRNIPSSINNNSINNGIGIKN 441 Query: 638 SDEN-------QVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKIS 796 S+ + V + FI+ +SN + S +K+N + NS+ N +M + + Sbjct: 442 SNNSFLNSVPHSVTRMFINEDSNDNNNNDNSKNKNN-----NNNNSNNNNNEDIMNTPLH 496 Query: 797 DSDNPAILSAMTMPNI 844 + LS + NI Sbjct: 497 EEQLADSLSTFDISNI 512
>sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10) Length = 1563 Score = 34.3 bits (77), Expect = 1.2 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Frame = +2 Query: 1049 QNYVPNFVGKSQDEGLDVEKSTKLANNTAQINR-----QPNPQQNLGSSNRANQHQAQQQ 1213 QN+ N + V+ + + ANN Q NR QP Q N+ NQ+Q QQQ Sbjct: 211 QNHNQNQMQNPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQNQQQ 270 Query: 1214 SVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQ 1393 S + + +T +Q + QN + T P + G Q Q H Q Sbjct: 271 SHNQN---MTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQ-HGQQ 326 Query: 1394 QQMH 1405 +Q H Sbjct: 327 EQHH 330
>sp|P21657|DAL81_YEAST Transcriptional activator protein DAL81 (Regulatory protein UGA35) Length = 970 Score = 33.9 bits (76), Expect = 1.6 Identities = 26/98 (26%), Positives = 38/98 (38%) Frame = +2 Query: 1154 NPQQNLGSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPY 1333 +P N S ++ + + S +N+ + +SNH N N T H HP Sbjct: 6 SPADNAASPTKSVKATTKNSSTNNNVNSNNSNNNSNHDILNFNDNYTTIL-QHLANDHPN 64 Query: 1334 AMAHQGGGLQQFPTQLHLMQQQMHNFPPSYQLQEHLMT 1447 + +GG Q Q H QQQ Q Q+ L T Sbjct: 65 ILREKGGSQQ----QQHQQQQQQQQQQQQQQQQQSLDT 98
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,660,061
Number of Sequences: 369166
Number of extensions: 3868546
Number of successful extensions: 11154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11077
length of database: 68,354,980
effective HSP length: 116
effective length of database: 46,925,720
effective search space used: 22946677080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
