Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C19
(975 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10669|SUR2_CAEEL Protein sur-2 39 0.017
sp|P34291|PQN8_CAEEL Protein pqn-8 39 0.017
sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B 39 0.022
sp|P57313|MURD_BUCAI UDP-N-acetylmuramoylalanine--D-glutama... 39 0.029
sp|Q873Y3|PACC_CANDU pH-response transcription factor pacC/... 36 0.19
sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim)... 34 0.55
sp|P31264|HMPB_DROME Homeotic proboscipedia protein 33 0.93
sp|Q9HGI2|RAD52_NEUCR DNA repair and recombination protein ... 33 1.2
sp|P21657|DAL81_YEAST Transcriptional activator protein DAL... 33 1.6
sp|P54681|RTOA_DICDI Protein rtoA (Ratio-A) 33 1.6
>sp|Q10669|SUR2_CAEEL Protein sur-2
Length = 1587
Score = 39.3 bits (90), Expect = 0.017
Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 25/117 (21%)
Frame = +1
Query: 670 PNPQQNLGSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVT----------- 816
P PQQ+ S QH + + ++ T Q SNHP Q + + +
Sbjct: 1439 PPPQQHSSSLQHHLQHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIPNMSMHQQMGPQ 1498
Query: 817 ---ATGAHPTAPHPYAMAHQGGG-----------LQQFPTQLHLMQQQMHNFPPSYQ 945
A HP+ P + G G QQ P +H M M N P Q
Sbjct: 1499 YPGAVFHHPSGPVGHVPMQYGMGHHMQQHPHLPHHQQMPAPMHTMNPMMQNMTPQQQ 1555
>sp|P34291|PQN8_CAEEL Protein pqn-8
Length = 401
Score = 39.3 bits (90), Expect = 0.017
Identities = 37/133 (27%), Positives = 54/133 (40%)
Frame = +1
Query: 13 PPPGMSNAHVLQQFQNNPQYFSFNIPNGSSIFSGCNMNQVNDFSDIGTSDENQVQQSFIH 192
P G SN Q N+ + + N NG + + N N VN +S ++ +NQ QQ F
Sbjct: 203 PTSGFSNQQTSNQ--NSGFFNNQNQQNGQNFGNSGNQNGVNPYSGAFSNGQNQNQQGFF- 259
Query: 193 SESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKISDSDNPAILSAMTMPNICCF 372
N + +Q+ SN + VQ N+ NQ+Q PNI F
Sbjct: 260 --GNNQNNQQNSNGQ-----VQGSQNNQIWNQNQ-------------------NPNILPF 293
Query: 373 PPVYMNNFHNFMP 411
P +N+ F P
Sbjct: 294 GPNLVNSNTQFGP 306
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B
Length = 1669
Score = 38.9 bits (89), Expect = 0.022
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Frame = +1
Query: 562 RTQNYVPNFV---GKSQDEGLDVEKSTKLANNTAQINRQPNPQQNLGSSNRANQHQAQQQ 732
RT NY N G++ D +E+ +L AQ +Q + SS+ + Q+ +
Sbjct: 298 RTANYERNLSLDEGRAGDSRQSLEELKQLR---AQAQQQSLLNNSSSSSSNSQVEQSMRS 354
Query: 733 SVSNDARFLTFH-----QHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQG-GGLQQFPT 894
++ + R L + Q+S H +QNN+ A G + A+A+ G G QQ P
Sbjct: 355 TIEHHMRSLDRNLPLELQYSRHRFQNNLNAVAAAGGGGGNSSTGNAVANSGTSGSQQPPM 414
Query: 895 QL------HLMQQQMHNFPP 936
L + QQ + N PP
Sbjct: 415 PLSSEFREQIRQQLLGNIPP 434
>sp|P57313|MURD_BUCAI UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme)
Length = 440
Score = 38.5 bits (88), Expect = 0.029
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Frame = +1
Query: 88 PNGSSIFSGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIP 267
PNG + ++ N + +++++S IHS++ K S T+ S + +CS + P
Sbjct: 190 PNGFQQYKNTKLSVYNQAEICIINSNDKIEKSLIHSKNKKWISFGTNRSDYRICSKSNDP 249
Query: 268 -----NSSTMNQSQVMLSKISDSDNPAILSAMTMPNICCFP 375
N +N S+++L + +N IL ++ + + FP
Sbjct: 250 ILFFKNKKILNTSEILLYGYHNYNN--ILVSLAISDAMQFP 288
>sp|Q873Y3|PACC_CANDU pH-response transcription factor pacC/RIM101
Length = 666
Score = 35.8 bits (81), Expect = 0.19
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Frame = +1
Query: 595 KSQDEGLDVEKSTKLANNTAQINRQPNPQQNLGSSNRANQHQAQQQSVSNDARFL--TFH 768
KS +DV+ +T ++ T+ + N N S+ +Q A + T +
Sbjct: 33 KSPSSDIDVDNATSPSSFTSSQSPHINAMGNSPHSSFTSQSAANSPITDAKQHLVKTTTN 92
Query: 769 QHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQQQMHNFPPSYQL 948
+H + ++ A+ + TAP Y QQ PTQLH Q++N PSY L
Sbjct: 93 EHKPAAFTPSVGQ-QPASQTNTTAPQSYTQP-----AQQLPTQLHPSLNQVYNNQPSYYL 146
>sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10)
Length = 1563
Score = 34.3 bits (77), Expect = 0.55
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Frame = +1
Query: 568 QNYVPNFVGKSQDEGLDVEKSTKLANNTAQINR-----QPNPQQNLGSSNRANQHQAQQQ 732
QN+ N + V+ + + ANN Q NR QP Q N+ NQ+Q QQQ
Sbjct: 211 QNHNQNQMQNPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQNQQQ 270
Query: 733 SVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQ 912
S + + +T +Q + QN + T P + G Q Q H Q
Sbjct: 271 SHNQN---MTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQ-HGQQ 326
Query: 913 QQMH 924
+Q H
Sbjct: 327 EQHH 330
>sp|P31264|HMPB_DROME Homeotic proboscipedia protein
Length = 782
Score = 33.5 bits (75), Expect = 0.93
Identities = 26/119 (21%), Positives = 46/119 (38%)
Frame = +1
Query: 511 YPLPEEYDELIQKQKFQRTQNYVPNFVGKSQDEGLDVEKSTKLANNTAQINRQPNPQQNL 690
YP P++ + +Q+Q+ Q +P + D+E + +N + + +
Sbjct: 467 YPSPKQQQQ-VQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQALHGEYLS 525
Query: 691 GSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQ 867
+ AN HQ QQ ND + ++ + PY N H H +A HQ
Sbjct: 526 PKPSSANFHQNSQQQQQNDHFYYNYNDTNGTPYLN-----------HQQQHHHHAQHHQ 573
>sp|Q9HGI2|RAD52_NEUCR DNA repair and recombination protein mus-11 (RAD52 homolog)
Length = 600
Score = 33.1 bits (74), Expect = 1.2
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 640 ANNTAQINRQPNPQQNLGSSNRANQHQAQQQSVSNDARFL--TFHQHSNHPYQNNMFNCV 813
+ +T +N + PQ + + RA QQQ SN +R + + SN NN N
Sbjct: 281 SGSTGSLNTRQQPQNSHQFTARAQSRPPQQQLNSNQSRPMGQPVNNSSNANTPNNPQNYT 340
Query: 814 TATGAHPTAPHPYAMA 861
T P AP P A A
Sbjct: 341 TPQKPAPAAPAPQAGA 356
>sp|P21657|DAL81_YEAST Transcriptional activator protein DAL81 (Regulatory protein UGA35)
Length = 970
Score = 32.7 bits (73), Expect = 1.6
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = +1
Query: 673 NPQQNLGSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPY 852
+P N S ++ + + S +N+ + +SNH N N T H HP
Sbjct: 6 SPADNAASPTKSVKATTKNSSTNNNVNSNNSNNNSNHDILNFNDNYTTIL-QHLANDHPN 64
Query: 853 AMAHQGGGLQQFPTQLHLMQQQ 918
+ +GG QQ Q QQQ
Sbjct: 65 ILREKGGSQQQQHQQQQQQQQQ 86
>sp|P54681|RTOA_DICDI Protein rtoA (Ratio-A)
Length = 400
Score = 32.7 bits (73), Expect = 1.6
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +1
Query: 70 YFSFNIP--NGSSIFSGCNMNQVNDFSDIGTSDENQVQQS--FIHSESNKEFSQKTSNSK 237
YF+F I NGS S +++ D SDI +S N S + S SN SQ TSNS
Sbjct: 45 YFNFTIKKKNGSIGSSSQSLSSEVDSSDISSSGSNSTASSEGSVSSSSNSG-SQSTSNSG 103
Query: 238 HNLCSVQSIPNSSTMNQSQVMLSKISDSDNPAILSAMTMPN 360
+ + ST N S+ S S N S+ N
Sbjct: 104 SEASGSSNSGSQSTSNSG----SEASGSSNSGSQSSTDSSN 140
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,696,435
Number of Sequences: 369166
Number of extensions: 2167972
Number of successful extensions: 6424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6367
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10191921135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)