Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_L22
(852 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52172|SRP_DROME Box A-binding factor (ABF) (Serpent pro... 45 2e-04
sp|P34291|PQN8_CAEEL Protein pqn-8 40 0.011
sp|P57313|MURD_BUCAI UDP-N-acetylmuramoylalanine--D-glutama... 38 0.041
sp|Q03656|SKY1_YEAST Serine/threonine-protein kinase SKY1 (... 36 0.12
sp|P53214|YG1F_YEAST Hypothetical 57.5 kDa protein in VMA7-... 34 0.59
sp|P22121|HSF_KLULA Heat shock factor protein (HSF) (Heat s... 33 1.3
sp|Q01593|ABI3_ARATH Abscisic acid-insensitive protein 3 33 1.3
sp|P54681|RTOA_DICDI Protein rtoA (Ratio-A) 33 1.3
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 32 1.7
sp|P34587|YN53_CAEEL Hypothetical protein ZC21.3 in chromos... 32 2.2
>sp|P52172|SRP_DROME Box A-binding factor (ABF) (Serpent protein) (GATA-binding factor-B)
(Transcription factor GATA-B) (dGATA-B)
Length = 1264
Score = 45.4 bits (106), Expect = 2e-04
Identities = 33/118 (27%), Positives = 50/118 (42%)
Frame = +2
Query: 407 PNTNYKLSDCISNNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSI 586
PN+NY++S HQ + + SP P + Q NN N N SSI
Sbjct: 980 PNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIFNTPSPTHQLHNNN-----NNNNNSSI 1034
Query: 587 FSGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSST 760
F+ N N + + N++ Q ++ ++ S S S H L + Q +PNS T
Sbjct: 1035 FNNNNNN-----NSSSNENNNKLIQKYLQAQQLSSSSNSGSTSDHQLLA-QLLPNSIT 1086
>sp|P34291|PQN8_CAEEL Protein pqn-8
Length = 401
Score = 39.7 bits (91), Expect = 0.011
Identities = 35/122 (28%), Positives = 52/122 (42%)
Frame = +2
Query: 410 NTNYKLSDCISNNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSIF 589
N N S NN N+ + P G SN Q N+ + + N NG +
Sbjct: 177 NQNLGASSGFFNNQNQQNSQ--QNQVNGPTSGFSNQQTSNQ--NSGFFNNQNQQNGQNFG 232
Query: 590 SGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQ 769
+ N N VN +S ++ +NQ QQ F N + +Q+ SN + VQ N+ NQ
Sbjct: 233 NSGNQNGVNPYSGAFSNGQNQNQQGFF---GNNQNNQQNSNGQ-----VQGSQNNQIWNQ 284
Query: 770 SQ 775
+Q
Sbjct: 285 NQ 286
>sp|P57313|MURD_BUCAI UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme)
Length = 440
Score = 37.7 bits (86), Expect = 0.041
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Frame = +2
Query: 569 PNGSSIFSGCNMNQVNDFSDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIP 748
PNG + ++ N + +++++S IHS++ K S T+ S + +CS + P
Sbjct: 190 PNGFQQYKNTKLSVYNQAEICIINSNDKIEKSLIHSKNKKWISFGTNRSDYRICSKSNDP 249
Query: 749 -----NSSTMNQSQVMLSKISDSDN----PAILSAMTMP 838
N +N S+++L + +N AI AM P
Sbjct: 250 ILFFKNKKILNTSEILLYGYHNYNNILVSLAISDAMQFP 288
>sp|Q03656|SKY1_YEAST Serine/threonine-protein kinase SKY1 (SRPK)
Length = 742
Score = 36.2 bits (82), Expect = 0.12
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Frame = +2
Query: 461 NTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGS-SIFSGCNMNQVNDFSDIGT 637
+T I S PL P SN ++ + SF+ +G+ +I S N N +N+ I
Sbjct: 382 HTIITGSQPLPSPISSSNFFEMRAHFCGSSHNSFSSVSGNRNIPSSINNNSINNGIGIKN 441
Query: 638 SDEN-------QVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKIS 796
S+ + V + FI+ +SN + S +K+N + NS+ N +M + +
Sbjct: 442 SNNSFLNSVPHSVTRMFINEDSNDNNNNDNSKNKNN-----NNNNSNNNNNEDIMNTPLH 496
Query: 797 DSDNPAILSAMTMPNI 844
+ LS + NI
Sbjct: 497 EEQLADSLSTFDISNI 512
>sp|P53214|YG1F_YEAST Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic region
Length = 551
Score = 33.9 bits (76), Expect = 0.59
Identities = 38/183 (20%), Positives = 78/183 (42%)
Frame = +2
Query: 296 SVTKSKPEIKSNDMFSNSSVINKRSMEISADKKIISDPNTNYKLSDCISNNHQSLNTTIL 475
+V + + S+ + ++SS++ + S+ S +++ +S IS + + + +
Sbjct: 151 TVASTSSTVASSTLSTSSSLV----ISTSSSTFTFSSESSSSLISSSISTSVSTSSVYVP 206
Query: 476 SSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSIFSGCNMNQVNDFSDIGTSDENQV 655
SSS PP S + Y S + + S++FS + FS +S +
Sbjct: 207 SSSTSSPPSSSSEL-------TSSSYSSSS--SSSTLFS-----YSSSFSSSSSSSSSSS 252
Query: 656 QQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKISDSDNPAILSAMTM 835
S S S+ + +++S ++ S S P+ S+ + S S S S + +I A
Sbjct: 253 SSSSSSSSSSSSYFTLSTSSSSSIYSSSSYPSFSSSSSSNPTSSITSTSASSSITPASEY 312
Query: 836 PNI 844
N+
Sbjct: 313 SNL 315
>sp|P22121|HSF_KLULA Heat shock factor protein (HSF) (Heat shock transcription factor)
(HSTF)
Length = 677
Score = 32.7 bits (73), Expect = 1.3
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Frame = +2
Query: 443 NNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSIFSGCNMNQVNDF 622
N QS I+ SP PP QQ Q Q FS+ I G+ + MNQ+
Sbjct: 468 NQRQSPQNRIVGQSP---PPQQQQQQQQQQGQPQGQQFSYPIQGGNQM-----MNQLG-- 517
Query: 623 SDIGTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKI-SD 799
S IGT + V + + N ++S + N S ++ + S ++ S + SD
Sbjct: 518 SPIGTQVGSPVGSQYGNQYGN-QYSNQFGNQLQQQTSRPALHHGSNGEIRELTPSIVSSD 576
Query: 800 SDNPA 814
S +PA
Sbjct: 577 SPDPA 581
>sp|Q01593|ABI3_ARATH Abscisic acid-insensitive protein 3
Length = 720
Score = 32.7 bits (73), Expect = 1.3
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 398 ISDPNTNYKLSDCISNNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNP--QYFSFNIP 571
+SDP Y + + L +L S P PPP S QQF P QY F P
Sbjct: 364 VSDPGFGYMPAPNYPPQPEFL--PLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGDP 421
Query: 572 NGSSIFSGCNMN 607
G F+G NMN
Sbjct: 422 TG---FNGYNMN 430
>sp|P54681|RTOA_DICDI Protein rtoA (Ratio-A)
Length = 400
Score = 32.7 bits (73), Expect = 1.3
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +2
Query: 551 YFSFNIP--NGSSIFSGCNMNQVNDFSDIGTSDENQVQQS--FIHSESNKEFSQKTSNSK 718
YF+F I NGS S +++ D SDI +S N S + S SN SQ TSNS
Sbjct: 45 YFNFTIKKKNGSIGSSSQSLSSEVDSSDISSSGSNSTASSEGSVSSSSNSG-SQSTSNSG 103
Query: 719 HNLCSVQSIPNSSTMNQSQVMLSKISDSDNPAILSAMTMPN 841
+ + ST N S+ S S N S+ N
Sbjct: 104 SEASGSSNSGSQSTSNSG----SEASGSSNSGSQSSTDSSN 140
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
(Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
Length = 1253
Score = 32.3 bits (72), Expect = 1.7
Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 4/171 (2%)
Frame = +2
Query: 308 SKPEIKSNDMFSNSSVINKRSMEISADKKIISDPNTNYKLSDCI--SNNHQSLNTTILSS 481
S S++ +S + S+D SD + + SD SN+ +S +++ S
Sbjct: 656 SSDSSNSSNSSDSSDSSDSSDSSSSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSD 715
Query: 482 SPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSIFSGCNMNQVNDFSDIGTSDENQVQQ 661
S SN++ +N S + + S N + +D SD S ++
Sbjct: 716 SDSSDSSDSSNSNSSDSDSSN----SSDSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSS 771
Query: 662 SFIHSE--SNKEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKISDSDN 808
S SN S +SNS + S S +S++ + S S SDS N
Sbjct: 772 DSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSN 822
Score = 32.3 bits (72), Expect = 1.7
Identities = 38/177 (21%), Positives = 69/177 (38%), Gaps = 4/177 (2%)
Frame = +2
Query: 290 DKSVTKSKPEIKSNDMFSNSSVINKRSMEISADKKIISDPNTNYKLSDCISNNHQSLNTT 469
D S + + +D + S N S+D SD + + SD +++ S ++
Sbjct: 840 DSSDSSDSSDSSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSNESSNSSDSSD 899
Query: 470 ILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSIFSGCNMNQVNDFSDIGTSDEN 649
+SS +++ ++ S N + S+ N + +D SD S ++
Sbjct: 900 SSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDS 959
Query: 650 Q----VQQSFIHSESNKEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKISDSDN 808
S S+SN S +SNS + S S +S + + S S SDS +
Sbjct: 960 SNSGDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSN--SSDSSDSSD 1014
Score = 31.6 bits (70), Expect = 2.9
Identities = 38/161 (23%), Positives = 65/161 (40%)
Frame = +2
Query: 326 SNDMFSNSSVINKRSMEISADKKIISDPNTNYKLSDCISNNHQSLNTTILSSSPLCPPPG 505
S+ SNSS + + S+D SD + + SD +++ S ++ SS
Sbjct: 722 SDSSNSNSSDSDSSNSSDSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSN 781
Query: 506 MSNAHVLQQFQNNPQYFSFNIPNGSSIFSGCNMNQVNDFSDIGTSDENQVQQSFIHSESN 685
S++ N S + + S+ N + +D SD SD + S SN
Sbjct: 782 SSDS--------NDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDS-----SN 828
Query: 686 KEFSQKTSNSKHNLCSVQSIPNSSTMNQSQVMLSKISDSDN 808
S +SNS + S S +S + + ++ S SDS +
Sbjct: 829 SSDSSDSSNSSDSSDSSDSSDSSDSDSSNRSDSSNSSDSSD 869
>sp|P34587|YN53_CAEEL Hypothetical protein ZC21.3 in chromosome III
Length = 321
Score = 32.0 bits (71), Expect = 2.2
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Frame = +2
Query: 407 PNTNYKLSDCISNNHQSLNTTILSSSPLCPPPGMSNAHVLQQFQNNPQYFSFNIPNGSSI 586
P+T Y + + Q+ N + SSS + P S + Q QN Y +++ N +S
Sbjct: 85 PSTTYSPTSTYGYSSQNYNPSSASSSNVYRNPSTSYGNTQQSNQN---YVAYDTTNQNSP 141
Query: 587 FSGCNMNQVNDFSDI--------GTSDENQVQQSFIHSESNKEFSQKTSNSKHNLCSVQS 742
+ + ++ + +S++NQV + +SN + + +N + Q
Sbjct: 142 YYYQRVPSTAQYNSVLGVNAGFPQSSNQNQV----LRDQSNNQGYMNNNQGMYNTQTTQG 197
Query: 743 IPNSSTMNQSQVM 781
N+ Q+Q+M
Sbjct: 198 YGNNQGSYQNQMM 210
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,808,488
Number of Sequences: 369166
Number of extensions: 1639107
Number of successful extensions: 5607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5594
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)