Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H19
(830 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10669|SUR2_CAEEL Protein sur-2 40 0.008
sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B 39 0.018
sp|Q873Y3|PACC_CANDU pH-response transcription factor pacC/... 37 0.087
sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim)... 34 0.43
sp|P21657|DAL81_YEAST Transcriptional activator protein DAL... 34 0.56
sp|P31264|HMPB_DROME Homeotic proboscipedia protein 33 0.74
sp|Q46970|IM24_ECOLI Microcin-24 immunity protein 33 0.74
sp|Q9UW14|PACC_CANAL pH-response transcription factor pacC/... 33 0.96
sp|Q9HGI2|RAD52_NEUCR DNA repair and recombination protein ... 33 0.96
sp|Q7MLY4|DNAE2_VIBVY Error-prone DNA polymerase 32 1.6
>sp|Q10669|SUR2_CAEEL Protein sur-2
Length = 1587
Score = 40.0 bits (92), Expect = 0.008
Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 31/127 (24%)
Frame = +1
Query: 163 PNPQQNLGSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVT----------- 309
P PQQ+ S QH + + ++ T Q SNHP Q + + +
Sbjct: 1439 PPPQQHSSSLQHHLQHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIPNMSMHQQMGPQ 1498
Query: 310 ---ATGAHPTAPHPYAMAHQGGG-----------LQQFPTQLHLMQQQMHNFPPS----- 432
A HP+ P + G G QQ P +H M M N P
Sbjct: 1499 YPGAVFHHPSGPVGHVPMQYGMGHHMQQHPHLPHHQQMPAPMHTMNPMMQNMTPQQQYLY 1558
Query: 433 -YQLQEH 450
QLQ+H
Sbjct: 1559 MQQLQQH 1565
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B
Length = 1669
Score = 38.9 bits (89), Expect = 0.018
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Frame = +1
Query: 55 RTQNYVPNFV---GKSQDEGLDVEKSTKLANNTAQINRQPNPQQNLGSSNRANQHQAQQQ 225
RT NY N G++ D +E+ +L AQ +Q + SS+ + Q+ +
Sbjct: 298 RTANYERNLSLDEGRAGDSRQSLEELKQLR---AQAQQQSLLNNSSSSSSNSQVEQSMRS 354
Query: 226 SVSNDARFLTFH-----QHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQG-GGLQQFPT 387
++ + R L + Q+S H +QNN+ A G + A+A+ G G QQ P
Sbjct: 355 TIEHHMRSLDRNLPLELQYSRHRFQNNLNAVAAAGGGGGNSSTGNAVANSGTSGSQQPPM 414
Query: 388 QL------HLMQQQMHNFPP 429
L + QQ + N PP
Sbjct: 415 PLSSEFREQIRQQLLGNIPP 434
>sp|Q873Y3|PACC_CANDU pH-response transcription factor pacC/RIM101
Length = 666
Score = 36.6 bits (83), Expect = 0.087
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Frame = +1
Query: 88 KSQDEGLDVEKSTKLANNTAQINRQPNPQQNLGSSNRANQHQAQQQSVSNDARFL--TFH 261
KS +DV+ +T ++ T+ + N N S+ +Q A + T +
Sbjct: 33 KSPSSDIDVDNATSPSSFTSSQSPHINAMGNSPHSSFTSQSAANSPITDAKQHLVKTTTN 92
Query: 262 QHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQQQMHNFPPSYQL 441
+H + ++ A+ + TAP Y QQ PTQLH Q++N PSY L
Sbjct: 93 EHKPAAFTPSVGQ-QPASQTNTTAPQSYTQP-----AQQLPTQLHPSLNQVYNNQPSYYL 146
Query: 442 QE 447
+
Sbjct: 147 HQ 148
>sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10)
Length = 1563
Score = 34.3 bits (77), Expect = 0.43
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Frame = +1
Query: 61 QNYVPNFVGKSQDEGLDVEKSTKLANNTAQINR-----QPNPQQNLGSSNRANQHQAQQQ 225
QN+ N + V+ + + ANN Q NR QP Q N+ NQ+Q QQQ
Sbjct: 211 QNHNQNQMQNPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQNQQQ 270
Query: 226 SVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQ 405
S + + +T +Q + QN + T P + G Q Q H Q
Sbjct: 271 SHNQN---MTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQ-HGQQ 326
Query: 406 QQMH 417
+Q H
Sbjct: 327 EQHH 330
>sp|P21657|DAL81_YEAST Transcriptional activator protein DAL81 (Regulatory protein UGA35)
Length = 970
Score = 33.9 bits (76), Expect = 0.56
Identities = 26/98 (26%), Positives = 38/98 (38%)
Frame = +1
Query: 166 NPQQNLGSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPY 345
+P N S ++ + + S +N+ + +SNH N N T H HP
Sbjct: 6 SPADNAASPTKSVKATTKNSSTNNNVNSNNSNNNSNHDILNFNDNYTTIL-QHLANDHPN 64
Query: 346 AMAHQGGGLQQFPTQLHLMQQQMHNFPPSYQLQEHLMT 459
+ +GG Q Q H QQQ Q Q+ L T
Sbjct: 65 ILREKGGSQQ----QQHQQQQQQQQQQQQQQQQQSLDT 98
>sp|P31264|HMPB_DROME Homeotic proboscipedia protein
Length = 782
Score = 33.5 bits (75), Expect = 0.74
Identities = 26/119 (21%), Positives = 46/119 (38%)
Frame = +1
Query: 4 YPLPEEYDELIQKQKFQRTQNYVPNFVGKSQDEGLDVEKSTKLANNTAQINRQPNPQQNL 183
YP P++ + +Q+Q+ Q +P + D+E + +N + + +
Sbjct: 467 YPSPKQQQQ-VQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQALHGEYLS 525
Query: 184 GSSNRANQHQAQQQSVSNDARFLTFHQHSNHPYQNNMFNCVTATGAHPTAPHPYAMAHQ 360
+ AN HQ QQ ND + ++ + PY N H H +A HQ
Sbjct: 526 PKPSSANFHQNSQQQQQNDHFYYNYNDTNGTPYLN-----------HQQQHHHHAQHHQ 573
>sp|Q46970|IM24_ECOLI Microcin-24 immunity protein
Length = 93
Score = 33.5 bits (75), Expect = 0.74
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 597 IVIKNYLNILLCTRVLIFIL*DLLYCLIV----YKIQVRVLCIRNFYYYTDISEII 752
IV +N N +C R+L I+ L C I YKI+V+ FY + +S ++
Sbjct: 21 IVWRNKRNEFVCNRLLSIIIISFLICFIYPWLNYKIEVKYYIFEQFYLFCFLSSLV 76
>sp|Q9UW14|PACC_CANAL pH-response transcription factor pacC/RIM101 (pH-response regulator
protein 2)
Length = 661
Score = 33.1 bits (74), Expect = 0.96
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Frame = +1
Query: 88 KSQDEGLDVEKSTKLANNTAQINRQPNPQQNLGSSNRANQHQAQQQSVSNDARFLTFHQH 267
KS +DV+ +T ++ T+ + N N S+ +Q A S DA+ QH
Sbjct: 31 KSPSSDIDVDNATSPSSFTSSQSPHINAMGNSPHSSFTSQSAAN--SPITDAK-----QH 83
Query: 268 SNHPYQNNMFNCV-TATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQQQMHNFPPSYQLQ 444
P +A ++ TA Y QQ PTQLH Q +N PSY L
Sbjct: 84 LVKPTTTKPAAFAPSANQSNTTASQSYTQP-----AQQLPTQLHPSLNQAYNNQPSYYLH 138
Query: 445 E 447
+
Sbjct: 139 Q 139
>sp|Q9HGI2|RAD52_NEUCR DNA repair and recombination protein mus-11 (RAD52 homolog)
Length = 600
Score = 33.1 bits (74), Expect = 0.96
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 133 ANNTAQINRQPNPQQNLGSSNRANQHQAQQQSVSNDARFL--TFHQHSNHPYQNNMFNCV 306
+ +T +N + PQ + + RA QQQ SN +R + + SN NN N
Sbjct: 281 SGSTGSLNTRQQPQNSHQFTARAQSRPPQQQLNSNQSRPMGQPVNNSSNANTPNNPQNYT 340
Query: 307 TATGAHPTAPHPYAMA 354
T P AP P A A
Sbjct: 341 TPQKPAPAAPAPQAGA 356
>sp|Q7MLY4|DNAE2_VIBVY Error-prone DNA polymerase
Length = 1024
Score = 32.3 bits (72), Expect = 1.6
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Frame = +1
Query: 148 QINRQPNPQQNLGSSNRA-----NQHQAQQQSVSNDAR---FLTFHQHSNHP------YQ 285
QI RQ Q+L S+N N++ A+ Q + N F T SN+P YQ
Sbjct: 830 QILRQAKDIQSLASANAFYQLADNRYLARWQVMDNLDELPLFQTLPSISNNPLPKPSDYQ 889
Query: 286 NNMFNCVTATGAHPTAPHPYAMAHQGGGLQQFPTQLHLMQQQMH 417
N + ATG A HP AM + GGL +F T+ + + Q H
Sbjct: 890 N-VLEDYAATGLS-LAEHPVAMLEKAGGLTRF-TRANQLNQCSH 930
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,879,489
Number of Sequences: 369166
Number of extensions: 1742243
Number of successful extensions: 4654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4592
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)