Planaria EST Database

DrC_00562

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00562
         (550 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y3D6|TTC11_HUMAN  Tetratricopeptide repeat protein 11 (...    84   2e-16
sp|Q9CQ92|TTC11_MOUSE  Tetratricopeptide repeat protein 11 (...    80   3e-15
sp|P40515|YIG5_YEAST  Hypothetical 17.7 kDa protein in RNR3-...    54   3e-07
sp|P51281|YCF45_PORPU  Hypothetical 64.2 kDa protein ycf45 (...    34   0.21 
sp|Q58208|Y798_METJA  Hypothetical protein MJ0798                  32   1.3  
sp|Q80U22|RUSC2_MOUSE  RUN and SH3 domain containing protein 2     31   1.7  
sp|Q80ST9|CF152_MOUSE  Protein C6orf152 homolog                    30   3.0  
sp|P32742|YNH4_CAEEL  Putative serine/threonine-protein kina...    30   5.1  
sp|P38969|PNT1_YEAST  Pentamidine resistance factor, mitocho...    30   5.1  
sp|O06917|Y263_METJA  Hypothetical protein MJ0263                  30   5.1  

>sp|Q9Y3D6|TTC11_HUMAN Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
           homolog)
          Length = 152

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 43/119 (36%), Positives = 73/119 (61%)
 Frame = +3

Query: 9   IIDEDIALTEIAILRKQYASEKERGSICQQTQFTYAFNLCRSKDPDCLKLALTLLEDLRS 188
           +++E +++ ++    K++ SEK  GS+ + TQF YA+ L RSK  D ++  + LLE+L  
Sbjct: 4   VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP 63

Query: 189 RAFEKSSIRDYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLKERIKKDQIKD 365
           +   K   RDY+++ ++   +LK+Y++AL YV  +L  EP NNQ  +L+  I K   KD
Sbjct: 64  KG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

>sp|Q9CQ92|TTC11_MOUSE Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
           homolog)
          Length = 152

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 40/119 (33%), Positives = 73/119 (61%)
 Frame = +3

Query: 9   IIDEDIALTEIAILRKQYASEKERGSICQQTQFTYAFNLCRSKDPDCLKLALTLLEDLRS 188
           +++E +++ ++    +++ SE+  GS+ + TQF YA+ L RSK  + ++  + LLE+L  
Sbjct: 4   VLNELVSVEDLKNFERKFQSEQAAGSVSKSTQFEYAWCLVRSKYNEDIRRGIVLLEELLP 63

Query: 189 RAFEKSSIRDYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLKERIKKDQIKD 365
           +   K   RDY+++ ++   +LK+Y++AL YV  +L  EP NNQ  +L+  I K   KD
Sbjct: 64  KG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

>sp|P40515|YIG5_YEAST Hypothetical 17.7 kDa protein in RNR3-ARC15 intergenic region
          Length = 155

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
 Frame = +3

Query: 36  EIAILRKQYASEKERGSICQQTQFTYAFNLCRSKDPDCLKLALTLLEDLRSRAFEKSSIR 215
           ++ ILR+Q  SE    +  Q ++F YA+ L +S D +  +L + +L D+   A  +S  R
Sbjct: 21  QLEILRQQVVSEGGPTATIQ-SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRR 77

Query: 216 DYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLK----ERIKKDQIK 362
           + +Y+ +I   KL +Y  A  YV+ +   E NN Q+  LK    ++I+K+ +K
Sbjct: 78  ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKETLK 130

>sp|P51281|YCF45_PORPU Hypothetical 64.2 kDa protein ycf45 (ORF565)
          Length = 565

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
 Frame = +3

Query: 45  ILRKQYASEKERGSICQQTQF---------TYAFNLCRSKDPDCLKLALTLLEDLRSRAF 197
           +L    +S ++  S+ Q+T F         T+  N   ++D   L   +    ++ + +F
Sbjct: 338 VLSTNSSSLQKMSSLKQKTHFLQQREVKNKTFDLNKLENRDTSLLSTTINTPVNINNHSF 397

Query: 198 EKSSIRDYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLKERIKKD 353
           +  +   Y+Y  S+++  +     ALD   I+      ++ IL L+ ++K++
Sbjct: 398 QVEASIQYLYAYSLSWQHITSVISALDLPIILTKEIEKSDAILALRSQVKQN 449

>sp|Q58208|Y798_METJA Hypothetical protein MJ0798
          Length = 334

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 216 DYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLKE 338
           D I   +  Y KLKKY  AL Y E  L   PN  ++ Q+ E
Sbjct: 237 DLILKVAFTYFKLKKYKHALKYFEKALKLNPNVFELEQIYE 277

>sp|Q80U22|RUSC2_MOUSE RUN and SH3 domain containing protein 2
          Length = 1514

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 467 F*ILFNKSHTQSNAQTNKTCCSCRSSNYCSTNKP 366
           F  L+NK H+ S A  N    SC  S++CS   P
Sbjct: 282 FSTLYNKMHSSSRANLNSVPQSCSDSSFCSHADP 315

>sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog
          Length = 704

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +3

Query: 252 LKKYDEALDYVEIILNREPNNNQILQLKERIKKDQIKD 365
           L K+++A + +  +++R  +NN+I  LKER++K Q K+
Sbjct: 150 LNKFEDAENEISQLIHR--HNNEITALKERLRKSQEKE 185

>sp|P32742|YNH4_CAEEL Putative serine/threonine-protein kinase R107.4
          Length = 820

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +3

Query: 147 CLKLALTLLEDLRSRAFEK----SSIRDYIYFSSIAYLKLKKYDEALDYVEIILNREPN- 311
           C K      EDLR    +       I  Y+++   A L  +KY + L  VE+ L R  N 
Sbjct: 551 CAKQLSKDAEDLRLEDMDLPGICEEIESYVFYDKQAILSTQKYSQEL--VELCLKRRNNI 608

Query: 312 NNQILQLKERIKKDQI 359
             QI    +RI K ++
Sbjct: 609 MEQIFNSPDRINKSKL 624

>sp|P38969|PNT1_YEAST Pentamidine resistance factor, mitochondrial precursor
          Length = 423

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 274 LIMLKSF*TGNQTTIK-FCSSKNESKKIKLKMG 369
           L +LKS+ TG Q T+K F  ++NE +K  +K G
Sbjct: 111 LYLLKSYKTGIQNTLKVFWDTRNEEQKFSIKNG 143

>sp|O06917|Y263_METJA Hypothetical protein MJ0263
          Length = 320

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 144 DCLKLALTLLEDLRSRAFEKSSIRDYIYFSSIAYLKL--KKYDEALDYVEIILNREPNN 314
           D LK+A+ L E+L               +  IAYL+L    Y+EAL+Y+   L + PN+
Sbjct: 203 DALKMAINLNENLVH------------VYKDIAYLELANNNYEEALNYITKYLEKFPND 249

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,161,872
Number of Sequences: 369166
Number of extensions: 819654
Number of successful extensions: 2297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2294
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00562

  1. Dr_sW_014_I18
  2. Dr_sW_007_B22
  3. Dr_sW_007_B18