Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_B18
(522 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3D6|TTC11_HUMAN Tetratricopeptide repeat protein 11 (... 80 3e-15
sp|Q9CQ92|TTC11_MOUSE Tetratricopeptide repeat protein 11 (... 76 6e-14
sp|P40515|YIG5_YEAST Hypothetical 17.7 kDa protein in RNR3-... 54 2e-07
sp|P51281|YCF45_PORPU Hypothetical 64.2 kDa protein ycf45 (... 34 0.19
sp|Q58208|Y798_METJA Hypothetical protein MJ0798 32 1.2
sp|Q80U22|RUSC2_MOUSE RUN and SH3 domain containing protein 2 31 1.6
sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog 30 2.7
sp|P32742|YNH4_CAEEL Putative serine/threonine-protein kina... 30 4.6
sp|P38969|PNT1_YEAST Pentamidine resistance factor, mitocho... 30 4.6
sp|O06917|Y263_METJA Hypothetical protein MJ0263 30 4.6
>sp|Q9Y3D6|TTC11_HUMAN Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
homolog)
Length = 152
Score = 80.1 bits (196), Expect = 3e-15
Identities = 42/104 (40%), Positives = 64/104 (61%)
Frame = +2
Query: 26 KQYASEKERGSICQQTQFTYAFNLCRSKDPDCLKLALTLLEDLRSRAFEKSSIRDYIYFS 205
K++ SEK GS+ + TQF YA+ L RSK D ++ + LLE+L + K RDY+++
Sbjct: 19 KKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYL 77
Query: 206 SIAYLKLKKYDEALDYVEIILNREPNNNQILQLKERIKKDQIKD 337
++ +LK+Y++AL YV +L EP NNQ +L+ I K KD
Sbjct: 78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>sp|Q9CQ92|TTC11_MOUSE Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
homolog)
Length = 152
Score = 75.9 bits (185), Expect = 6e-14
Identities = 39/104 (37%), Positives = 64/104 (61%)
Frame = +2
Query: 26 KQYASEKERGSICQQTQFTYAFNLCRSKDPDCLKLALTLLEDLRSRAFEKSSIRDYIYFS 205
+++ SE+ GS+ + TQF YA+ L RSK + ++ + LLE+L + K RDY+++
Sbjct: 19 RKFQSEQAAGSVSKSTQFEYAWCLVRSKYNEDIRRGIVLLEELLPKG-SKEEQRDYVFYL 77
Query: 206 SIAYLKLKKYDEALDYVEIILNREPNNNQILQLKERIKKDQIKD 337
++ +LK+Y++AL YV +L EP NNQ +L+ I K KD
Sbjct: 78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>sp|P40515|YIG5_YEAST Hypothetical 17.7 kDa protein in RNR3-ARC15 intergenic region
Length = 155
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Frame = +2
Query: 8 EIAILRKQYASEKERGSICQQTQFTYAFNLCRSKDPDCLKLALTLLEDLRSRAFEKSSIR 187
++ ILR+Q SE + Q ++F YA+ L +S D + +L + +L D+ A +S R
Sbjct: 21 QLEILRQQVVSEGGPTATIQ-SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRR 77
Query: 188 DYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLK----ERIKKDQIK 334
+ +Y+ +I KL +Y A YV+ + E NN Q+ LK ++I+K+ +K
Sbjct: 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQKETLK 130
>sp|P51281|YCF45_PORPU Hypothetical 64.2 kDa protein ycf45 (ORF565)
Length = 565
Score = 34.3 bits (77), Expect = 0.19
Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Frame = +2
Query: 17 ILRKQYASEKERGSICQQTQF---------TYAFNLCRSKDPDCLKLALTLLEDLRSRAF 169
+L +S ++ S+ Q+T F T+ N ++D L + ++ + +F
Sbjct: 338 VLSTNSSSLQKMSSLKQKTHFLQQREVKNKTFDLNKLENRDTSLLSTTINTPVNINNHSF 397
Query: 170 EKSSIRDYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLKERIKKD 325
+ + Y+Y S+++ + ALD I+ ++ IL L+ ++K++
Sbjct: 398 QVEASIQYLYAYSLSWQHITSVISALDLPIILTKEIEKSDAILALRSQVKQN 449
>sp|Q58208|Y798_METJA Hypothetical protein MJ0798
Length = 334
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 188 DYIYFSSIAYLKLKKYDEALDYVEIILNREPNNNQILQLKE 310
D I + Y KLKKY AL Y E L PN ++ Q+ E
Sbjct: 237 DLILKVAFTYFKLKKYKHALKYFEKALKLNPNVFELEQIYE 277
>sp|Q80U22|RUSC2_MOUSE RUN and SH3 domain containing protein 2
Length = 1514
Score = 31.2 bits (69), Expect = 1.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 439 F*ILFNKSHTQSNAQTNKTCCSCRSSNYCSTNKP 338
F L+NK H+ S A N SC S++CS P
Sbjct: 282 FSTLYNKMHSSSRANLNSVPQSCSDSSFCSHADP 315
>sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog
Length = 704
Score = 30.4 bits (67), Expect = 2.7
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +2
Query: 224 LKKYDEALDYVEIILNREPNNNQILQLKERIKKDQIKD 337
L K+++A + + +++R +NN+I LKER++K Q K+
Sbjct: 150 LNKFEDAENEISQLIHR--HNNEITALKERLRKSQEKE 185
>sp|P32742|YNH4_CAEEL Putative serine/threonine-protein kinase R107.4
Length = 820
Score = 29.6 bits (65), Expect = 4.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +2
Query: 119 CLKLALTLLEDLRSRAFEK----SSIRDYIYFSSIAYLKLKKYDEALDYVEIILNREPN- 283
C K EDLR + I Y+++ A L +KY + L VE+ L R N
Sbjct: 551 CAKQLSKDAEDLRLEDMDLPGICEEIESYVFYDKQAILSTQKYSQEL--VELCLKRRNNI 608
Query: 284 NNQILQLKERIKKDQI 331
QI +RI K ++
Sbjct: 609 MEQIFNSPDRINKSKL 624
>sp|P38969|PNT1_YEAST Pentamidine resistance factor, mitochondrial precursor
Length = 423
Score = 29.6 bits (65), Expect = 4.6
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 246 LIMLKSF*TGNQTTIK-FCSSKNESKKIKLKMG 341
L +LKS+ TG Q T+K F ++NE +K +K G
Sbjct: 111 LYLLKSYKTGIQNTLKVFWDTRNEEQKFSIKNG 143
>sp|O06917|Y263_METJA Hypothetical protein MJ0263
Length = 320
Score = 29.6 bits (65), Expect = 4.6
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 116 DCLKLALTLLEDLRSRAFEKSSIRDYIYFSSIAYLKL--KKYDEALDYVEIILNREPNN 286
D LK+A+ L E+L + IAYL+L Y+EAL+Y+ L + PN+
Sbjct: 203 DALKMAINLNENLVH------------VYKDIAYLELANNNYEEALNYITKYLEKFPND 249
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,675,078
Number of Sequences: 369166
Number of extensions: 784600
Number of successful extensions: 2235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)