Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_B22
(486 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3D6|TTC11_HUMAN Tetratricopeptide repeat protein 11 (... 62 5e-10
sp|Q9CQ92|TTC11_MOUSE Tetratricopeptide repeat protein 11 (... 59 5e-09
sp|P40515|YIG5_YEAST Hypothetical 17.7 kDa protein in RNR3-... 39 0.008
sp|Q80U22|RUSC2_MOUSE RUN and SH3 domain containing protein 2 31 1.3
sp|Q58208|Y798_METJA Hypothetical protein MJ0798 30 2.3
sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog 30 3.9
sp|P51281|YCF45_PORPU Hypothetical 64.2 kDa protein ycf45 (... 29 5.0
sp|Q8N2Y8|RUSC2_HUMAN RUN and SH3 domain containing protein 2 29 6.6
sp|Q97GL0|SYFB_CLOAB Phenylalanyl-tRNA synthetase beta chai... 29 6.6
sp|O74501|YCRE_SCHPO Hypothetical protein CC285.14 in chrom... 28 8.6
>sp|Q9Y3D6|TTC11_HUMAN Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
homolog)
Length = 152
Score = 62.4 bits (150), Expect = 5e-10
Identities = 36/100 (36%), Positives = 52/100 (52%)
Frame = +2
Query: 2 SEKERGSICQQTQFTYAFNLCRSKDPDCXXXXXXXXXXXKSRAFEKSSIRDYIYFSSIAY 181
SEK GS+ + TQF YA+ L RSK D + K RDY+++ ++
Sbjct: 23 SEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 81
Query: 182 LKLKKYDEALDYVEIIVNREPNNNQILQLRERIKKDQIKD 301
+LK+Y++AL YV ++ EP NNQ +L I K KD
Sbjct: 82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>sp|Q9CQ92|TTC11_MOUSE Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
homolog)
Length = 152
Score = 59.3 bits (142), Expect = 5e-09
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +2
Query: 2 SEKERGSICQQTQFTYAFNLCRSKDPDCXXXXXXXXXXXKSRAFEKSSIRDYIYFSSIAY 181
SE+ GS+ + TQF YA+ L RSK + + K RDY+++ ++
Sbjct: 23 SEQAAGSVSKSTQFEYAWCLVRSKYNEDIRRGIVLLEELLPKG-SKEEQRDYVFYLAVGN 81
Query: 182 LKLKKYDEALDYVEIIVNREPNNNQILQLRERIKKDQIKD 301
+LK+Y++AL YV ++ EP NNQ +L I K KD
Sbjct: 82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>sp|P40515|YIG5_YEAST Hypothetical 17.7 kDa protein in RNR3-ARC15 intergenic region
Length = 155
Score = 38.5 bits (88), Expect = 0.008
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +2
Query: 32 QTQFTYAFNLCRSKDPDCXXXXXXXXXXXKSRAFEKSSIRDYIYFSSIAYLKLKKYDEAL 211
Q++F YA+ L +S D + A +S R+ +Y+ +I KL +Y A
Sbjct: 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAK 97
Query: 212 DYVEIIVNREPNNNQILQLR----ERIKKDQIK 298
YV+ + E NN Q+ L+ ++I+K+ +K
Sbjct: 98 RYVDTLFEHERNNKQVGALKSMVEDKIQKETLK 130
>sp|Q80U22|RUSC2_MOUSE RUN and SH3 domain containing protein 2
Length = 1514
Score = 31.2 bits (69), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 403 F*ILFNKSHTQSNAQTNKTCCSCRSSNYCSTNKP 302
F L+NK H+ S A N SC S++CS P
Sbjct: 282 FSTLYNKMHSSSRANLNSVPQSCSDSSFCSHADP 315
>sp|Q58208|Y798_METJA Hypothetical protein MJ0798
Length = 334
Score = 30.4 bits (67), Expect = 2.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 152 DYIYFSSIAYLKLKKYDEALDYVEIIVNREPNNNQILQLRE 274
D I + Y KLKKY AL Y E + PN ++ Q+ E
Sbjct: 237 DLILKVAFTYFKLKKYKHALKYFEKALKLNPNVFELEQIYE 277
>sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog
Length = 704
Score = 29.6 bits (65), Expect = 3.9
Identities = 13/38 (34%), Positives = 27/38 (71%)
Frame = +2
Query: 188 LKKYDEALDYVEIIVNREPNNNQILQLRERIKKDQIKD 301
L K+++A + + +++R +NN+I L+ER++K Q K+
Sbjct: 150 LNKFEDAENEISQLIHR--HNNEITALKERLRKSQEKE 185
>sp|P51281|YCF45_PORPU Hypothetical 64.2 kDa protein ycf45 (ORF565)
Length = 565
Score = 29.3 bits (64), Expect = 5.0
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +2
Query: 2 SEKERGSICQQTQF---TYAFNLCRSKDPDCXXXXXXXXXXXKSRAFEKSSIRDYIYFSS 172
S K++ QQ + T+ N ++D + +F+ + Y+Y S
Sbjct: 351 SLKQKTHFLQQREVKNKTFDLNKLENRDTSLLSTTINTPVNINNHSFQVEASIQYLYAYS 410
Query: 173 IAYLKLKKYDEALDYVEIIVNREPNNNQILQLRERIKKD 289
+++ + ALD I+ ++ IL LR ++K++
Sbjct: 411 LSWQHITSVISALDLPIILTKEIEKSDAILALRSQVKQN 449
>sp|Q8N2Y8|RUSC2_HUMAN RUN and SH3 domain containing protein 2
Length = 1516
Score = 28.9 bits (63), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 403 F*ILFNKSHTQSNAQTNKTCCSCRSSNYCSTNKP 302
F L+NK H A N SC S++CS + P
Sbjct: 284 FSTLYNKMHGTPRANLNSAPQSCSDSSFCSHSDP 317
>sp|Q97GL0|SYFB_CLOAB Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 792
Score = 28.9 bits (63), Expect = 6.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 331 SSNYCSTNKPIFNLIFFDSFSELQNLIVVWFPVHNDFNIIK 209
S NY + IF+ I SEL+N++ + P+ DF++++
Sbjct: 513 SINYSFVSPKIFDKILVPEDSELRNVVKIRNPLGEDFSVMR 553
>sp|O74501|YCRE_SCHPO Hypothetical protein CC285.14 in chromosome III
Length = 1150
Score = 28.5 bits (62), Expect = 8.6
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +2
Query: 185 KLKKYDEALDYVEIIVNREP---NNNQILQLRERIKKDQI 295
KL+K+DEAL++ I + N N+IL+L ++ K ++
Sbjct: 527 KLEKFDEALEFASAISKGKVSIYNKNKILELSKKTAKSKV 566
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,066,800
Number of Sequences: 369166
Number of extensions: 726164
Number of successful extensions: 2023
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)