Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_I18
(561 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3D6|TTC11_HUMAN Tetratricopeptide repeat protein 11 (... 35 0.13
sp|Q9CQ92|TTC11_MOUSE Tetratricopeptide repeat protein 11 (... 35 0.13
sp|P38969|PNT1_YEAST Pentamidine resistance factor, mitocho... 30 5.3
sp|Q08579|THIY_YEAST Putative thiamine transporter YOR192C 29 9.1
>sp|Q9Y3D6|TTC11_HUMAN Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
homolog)
Length = 152
Score = 35.0 bits (79), Expect = 0.13
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 205 KSSIRDYIYFSSICLFKI*KNMTRHFDYVEIILNREPNNNQILQLKERIKKDQIKD 372
K RDY+++ ++ +++ K + YV +L EP NNQ +L+ I K KD
Sbjct: 67 KEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>sp|Q9CQ92|TTC11_MOUSE Tetratricopeptide repeat protein 11 (TPR repeat protein 11) (Fis1
homolog)
Length = 152
Score = 35.0 bits (79), Expect = 0.13
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 205 KSSIRDYIYFSSICLFKI*KNMTRHFDYVEIILNREPNNNQILQLKERIKKDQIKD 372
K RDY+++ ++ +++ K + YV +L EP NNQ +L+ I K KD
Sbjct: 67 KEEQRDYVFYLAVGNYRL-KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121
>sp|P38969|PNT1_YEAST Pentamidine resistance factor, mitochondrial precursor
Length = 423
Score = 29.6 bits (65), Expect = 5.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 281 LIMLKSF*TGNQTTIK-FCSSKNESKKIKLKMG 376
L +LKS+ TG Q T+K F ++NE +K +K G
Sbjct: 111 LYLLKSYKTGIQNTLKVFWDTRNEEQKFSIKNG 143
>sp|Q08579|THIY_YEAST Putative thiamine transporter YOR192C
Length = 599
Score = 28.9 bits (63), Expect = 9.1
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -1
Query: 207 LSQTLDFLDLPVMSKANFKQSGSLDLQKIKSISK 106
+S+ L FL++PV ++A+ + DLQ IKS+++
Sbjct: 7 ISRALRFLEIPVKNRASVNFLRNPDLQPIKSVNQ 40
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,618,260
Number of Sequences: 369166
Number of extensions: 867736
Number of successful extensions: 1858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)