DrC_00515
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00515 (583 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P05318|RLA1_YEAST 60S acidic ribosomal protein P1-alpha ... 32 1.1 sp|Q9UXS6|RL12_PYRAB 50S ribosomal protein L12P 32 1.1 sp|P08055|RL12_SULAC 50S ribosomal protein L12P ('A' type) 32 1.5 sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1 30 3.3 sp|O28780|RL12_ARCFU 50S ribosomal protein L12P 30 4.4 sp|O57705|RL12_PYRHO 50S ribosomal protein L12P 30 4.4 sp|Q9HFQ7|RLA1_CANAL 60S acidic ribosomal protein P1-A (CaR... 29 7.4 sp|P15772|RL12_HALMA 50S ribosomal protein L12P ('A' type) ... 29 7.4 sp|P10622|RLA3_YEAST 60S acidic ribosomal protein P1-beta (... 29 9.7
>sp|P05318|RLA1_YEAST 60S acidic ribosomal protein P1-alpha (A1) (L12EIIA) Length = 106 Score = 32.0 bits (71), Expect = 1.1 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +1 Query: 226 ACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARFS 384 A L L D+++EI+++ + + + + DIFA+ NL D+L FS Sbjct: 10 AALILADSEIEISSEKLLTLTNAANVPDENIWADIFAKALDGQNLKDLLVNFS 62
>sp|Q9UXS6|RL12_PYRAB 50S ribosomal protein L12P Length = 107 Score = 32.0 bits (71), Expect = 1.1 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 217 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLAR 378 Y A L L+ EIN DN+ +L+ + E ++ I + VN+D+++ + Sbjct: 3 YVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEK 56
>sp|P08055|RL12_SULAC 50S ribosomal protein L12P ('A' type) Length = 105 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +1 Query: 217 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDML 372 Y A L L+ AK EI+ +NI +L + ++ + A K VN+D++L Sbjct: 3 YIYASLLLHAAKKEISEENIKNVLSAAGITVDEVRLKAVAAALKEVNIDEIL 54
>sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1 Length = 107 Score = 30.4 bits (67), Expect = 3.3 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +1 Query: 226 ACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDML 372 A L L+D +EI ADNI+ I K + E +FA++ ++DD++ Sbjct: 11 AALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLI 59
>sp|O28780|RL12_ARCFU 50S ribosomal protein L12P Length = 106 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/54 (25%), Positives = 27/54 (50%) Frame = +1 Query: 217 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLAR 378 Y A L L+ A EI DN+ +L+ + E ++ + + VN+D+ + + Sbjct: 3 YVYAALLLHSAGKEITEDNVKAVLEAAGVEVDEARVKALVAALEGVNIDEAIQK 56
>sp|O57705|RL12_PYRHO 50S ribosomal protein L12P Length = 108 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/54 (25%), Positives = 27/54 (50%) Frame = +1 Query: 217 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLAR 378 Y A L L+ EIN +N+ +L+ + E + I + VN+D+++ + Sbjct: 3 YVYAALLLHSVGKEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56
>sp|Q9HFQ7|RLA1_CANAL 60S acidic ribosomal protein P1-A (CaRP1A) Length = 106 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +1 Query: 226 ACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARFS 384 A L L DA+VEI ++ + ++ K+ E D+FA+ + +L + FS Sbjct: 10 AALILADAEVEITSEKLLALVTKANVEVEGIWADLFAKALEGKDLKEFFFNFS 62
>sp|P15772|RL12_HALMA 50S ribosomal protein L12P ('A' type) (Hmal12) Length = 115 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/50 (26%), Positives = 26/50 (52%) Frame = +1 Query: 217 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDD 366 Y A L LN+A EIN DN++ +L + + + + + V++++ Sbjct: 3 YVYAALILNEADEEINEDNLTDVLDAAGVDVEESRVKALVAALEDVDIEE 52
>sp|P10622|RLA3_YEAST 60S acidic ribosomal protein P1-beta (L44') (L12EIIB) Length = 106 Score = 28.9 bits (63), Expect = 9.7 Identities = 15/54 (27%), Positives = 29/54 (53%) Frame = +1 Query: 220 ALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARF 381 + A L DA +EI +DN+ I K + + D++A+ + +L ++L+ F Sbjct: 7 SFAAFILADAGLEITSDNLLTITKAAGANVDNVWADVYAKALEGKDLKEILSGF 60
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,481,170
Number of Sequences: 369166
Number of extensions: 689258
Number of successful extensions: 1825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
