Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G16
(280 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21359|NF1_HUMAN Neurofibromin (Neurofibromatosis-relate... 28 6.6
sp|Q04690|NF1_MOUSE Neurofibromin (Neurofibromatosis-relate... 28 6.6
sp|O75443|TECTA_HUMAN Alpha-tectorin precursor 28 6.6
sp|Q9CJD9|RECO_LACLA DNA repair protein recO (Recombination... 28 8.6
>sp|P21359|NF1_HUMAN Neurofibromin (Neurofibromatosis-related protein NF-1) [Contains:
Neurofibromin truncated]
Length = 2839
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 17 IVFASEISSLNVKRMTFDYSTRSFKIPTTRAPEEIHYDTCERLCPGRCEG 166
+ F +++SL K D TRS+K + IH D LC R +G
Sbjct: 466 LTFKEKVTSLKFKEKPTDLETRSYKYLLLSMVKLIHADPKLLLCNPRKQG 515
>sp|Q04690|NF1_MOUSE Neurofibromin (Neurofibromatosis-related protein NF-1)
Length = 2841
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 17 IVFASEISSLNVKRMTFDYSTRSFKIPTTRAPEEIHYDTCERLCPGRCEG 166
+ F +++SL K D TRS+K + IH D LC R +G
Sbjct: 466 LTFKEKVTSLKFKEKPTDLETRSYKCLLLSMVKLIHADPKLLLCNPRKQG 515
>sp|O75443|TECTA_HUMAN Alpha-tectorin precursor
Length = 2155
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 68 DYSTRSFKIPTTRAPEEIHYDTCERLCPGRC 160
D+ T++ + T + P HY C CP C
Sbjct: 584 DWRTQTGCVSTVQCPSFSHYSVCTSSCPDTC 614
>sp|Q9CJD9|RECO_LACLA DNA repair protein recO (Recombination protein O)
Length = 251
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 251 FSFIENSGIILIYKNDVFQIYFHANHIDHLHSVQDKA 141
FSFIE+ +++YKN I+ +A H ++ S+ D A
Sbjct: 66 FSFIEDVSEVVVYKNISSDIFINA-HASYIISLADAA 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,881,773
Number of Sequences: 369166
Number of extensions: 401899
Number of successful extensions: 1154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)