Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I02
(311 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05318|RLA1_YEAST 60S acidic ribosomal protein P1-alpha ... 28 5.0
sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 (Auxin-respon... 28 6.6
sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphospha... 28 8.6
>sp|P05318|RLA1_YEAST 60S acidic ribosomal protein P1-alpha (A1) (L12EIIA)
Length = 106
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 4 DAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARFS 144
D+++EI+++ + + + + DIFA+ NL D+L FS
Sbjct: 16 DSEIEISSEKLLTLTNAANVPDENIWADIFAKALDGQNLKDLLVNFS 62
>sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 (Auxin-responsive protein IAA22)
Length = 1086
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 20 SMLITFPKS*KNQNAKIINKLLTFLPKLQNMLT*MICLL 136
S+++ FP+ Q A + K F+P N+ + +ICLL
Sbjct: 40 SLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLL 78
>sp|P75386|SPOT_MYCPN Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
((ppGpp)ase) (Penta-phosphate
guanosine-3'-pyrophosphohydrolase)
Length = 733
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 10 KVEINADNISKILKKSKCENNKQTIDIFAEV 102
KV +++DN I+KK E+N + +DI E+
Sbjct: 401 KVNVSSDNEPNIVKKLNVESNSKLLDIAYEL 431
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,937,553
Number of Sequences: 369166
Number of extensions: 193477
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)