Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J12
(352 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05318|RLA1_YEAST 60S acidic ribosomal protein P1-alpha ... 32 0.45
sp|Q9UXS6|RL12_PYRAB 50S ribosomal protein L12P 32 0.45
sp|P08055|RL12_SULAC 50S ribosomal protein L12P ('A' type) 32 0.59
sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1 30 1.3
sp|O28780|RL12_ARCFU 50S ribosomal protein L12P 30 1.7
sp|O57705|RL12_PYRHO 50S ribosomal protein L12P 30 1.7
sp|Q9HFQ7|RLA1_CANAL 60S acidic ribosomal protein P1-A (CaR... 29 2.9
sp|P15772|RL12_HALMA 50S ribosomal protein L12P ('A' type) ... 29 2.9
sp|P10622|RLA3_YEAST 60S acidic ribosomal protein P1-beta (... 29 3.8
sp|P91913|RLA1_CAEEL 60S acidic ribosomal protein P1 28 5.0
>sp|P05318|RLA1_YEAST 60S acidic ribosomal protein P1-alpha (A1) (L12EIIA)
Length = 106
Score = 32.0 bits (71), Expect = 0.45
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 27 ACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARFS 185
A L L D+++EI+++ + + + + DIFA+ NL D+L FS
Sbjct: 10 AALILADSEIEISSEKLLTLTNAANVPDENIWADIFAKALDGQNLKDLLVNFS 62
>sp|Q9UXS6|RL12_PYRAB 50S ribosomal protein L12P
Length = 107
Score = 32.0 bits (71), Expect = 0.45
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 18 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLAR 179
Y A L L+ EIN DN+ +L+ + E ++ I + VN+D+++ +
Sbjct: 3 YVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEK 56
>sp|P08055|RL12_SULAC 50S ribosomal protein L12P ('A' type)
Length = 105
Score = 31.6 bits (70), Expect = 0.59
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 18 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDML 173
Y A L L+ AK EI+ +NI +L + ++ + A K VN+D++L
Sbjct: 3 YIYASLLLHAAKKEISEENIKNVLSAAGITVDEVRLKAVAAALKEVNIDEIL 54
>sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1
Length = 107
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 27 ACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDML 173
A L L+D +EI ADNI+ I K + E +FA++ ++DD++
Sbjct: 11 AALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLI 59
>sp|O28780|RL12_ARCFU 50S ribosomal protein L12P
Length = 106
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 18 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLAR 179
Y A L L+ A EI DN+ +L+ + E ++ + + VN+D+ + +
Sbjct: 3 YVYAALLLHSAGKEITEDNVKAVLEAAGVEVDEARVKALVAALEGVNIDEAIQK 56
>sp|O57705|RL12_PYRHO 50S ribosomal protein L12P
Length = 108
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 18 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLAR 179
Y A L L+ EIN +N+ +L+ + E + I + VN+D+++ +
Sbjct: 3 YVYAALLLHSVGKEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56
>sp|Q9HFQ7|RLA1_CANAL 60S acidic ribosomal protein P1-A (CaRP1A)
Length = 106
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 27 ACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARFS 185
A L L DA+VEI ++ + ++ K+ E D+FA+ + +L + FS
Sbjct: 10 AALILADAEVEITSEKLLALVTKANVEVEGIWADLFAKALEGKDLKEFFFNFS 62
>sp|P15772|RL12_HALMA 50S ribosomal protein L12P ('A' type) (Hmal12)
Length = 115
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 18 YALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDD 167
Y A L LN+A EIN DN++ +L + + + + + V++++
Sbjct: 3 YVYAALILNEADEEINEDNLTDVLDAAGVDVEESRVKALVAALEDVDIEE 52
>sp|P10622|RLA3_YEAST 60S acidic ribosomal protein P1-beta (L44') (L12EIIB)
Length = 106
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 21 ALACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARF 182
+ A L DA +EI +DN+ I K + + D++A+ + +L ++L+ F
Sbjct: 7 SFAAFILADAGLEITSDNLLTITKAAGANVDNVWADVYAKALEGKDLKEILSGF 60
>sp|P91913|RLA1_CAEEL 60S acidic ribosomal protein P1
Length = 111
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/100 (22%), Positives = 35/100 (35%)
Frame = +3
Query: 27 ACLALNDAKVEINADNISKILKKSKCENNKQTIDIFAEVAKYVNLDDMLARFSQXXXXXX 206
A L L D +V I + I+ +LK + E +FA+ + V++ +++ S
Sbjct: 12 AALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGP 71
Query: 207 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFGLFD 326
DMGFGLFD
Sbjct: 72 APAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,325,913
Number of Sequences: 369166
Number of extensions: 276275
Number of successful extensions: 758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)