Planaria EST Database

DrC_00508

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00508
         (579 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NZF1|PLAC8_HUMAN  Placenta-specific gene 8 protein (C15...    67   2e-11
sp|Q9JI48|PLAC8_MOUSE  Placenta-specific gene 8 protein (C15...    59   1e-08
sp|P26371|KRA59_HUMAN  Keratin-associated protein 5-9 (Kerat...    34   0.23 
sp|O27719|YG84_METTH  Hypothetical protein MTH1684                 32   1.5  
sp|P23327|SRCH_HUMAN  Sarcoplasmic reticulum histidine-rich ...    31   2.5  
sp|Q92800|EZH1_HUMAN  Enhancer of zeste homolog 1 (ENX-2)          30   3.3  
sp|P16230|SRCH_RABIT  Sarcoplasmic reticulum histidine-rich ...    30   3.3  
sp|Q6L8G5|KR510_HUMAN  Keratin-associated protein 5-10 (Kera...    30   3.3  
sp|P70351|EZH1_MOUSE  Enhancer of zeste homolog 1 (ENX-2)          30   3.3  
sp|Q61982|NOTC3_MOUSE  Neurogenic locus notch homolog protei...    30   4.3  

>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
          Length = 115

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +1

Query: 13  AEWQHGLCGCCSDCGTCLLSYLC-PCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRK 189
           + WQ G+C C SDCG CL    C PC  +G    A  + C LCG S           +R 
Sbjct: 24  SNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTS---------VAMRT 72

Query: 190 KVREKRGISGNFCYDLVASFCCPCCAVAQTHQEV 291
             R + GI G+ C D +A+ CCP C + Q  +++
Sbjct: 73  LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDI 106

>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
          Length = 112

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 31/93 (33%), Positives = 43/93 (46%)
 Frame = +1

Query: 13  AEWQHGLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKK 192
           + WQ  LC C SDCG CL    C   L G    A  + C LCG +           +R  
Sbjct: 21  SNWQTSLCDCFSDCGVCLCGTFCFTCL-GCQVAADMNECCLCGTT---------VAMRTL 70

Query: 193 VREKRGISGNFCYDLVASFCCPCCAVAQTHQEV 291
            R + GI G+ C D + +  CP C+V Q  +++
Sbjct: 71  YRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDI 103

>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Keratin-associated protein 5.9)
           (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
 Frame = +1

Query: 28  GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSC----FLCGLSYCIIPPCIGALIRKKV 195
           G CGC   CG+        C   G      G SC    + C    C +P C  +   K+ 
Sbjct: 2   GCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCGKRG 61

Query: 196 REKRGISGNFCYDL---VASFCCPCC 264
               G S   C        S C PCC
Sbjct: 62  CGSCGGSKGGCGSCGCSQCSCCKPCC 87

>sp|O27719|YG84_METTH Hypothetical protein MTH1684
          Length = 431

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 43  CSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGL 144
           C+DC  CL +  CP + +    +   D CF CG+
Sbjct: 345 CTDCAVCLAARRCPTHAIDNGLDL--DRCFGCGV 376

>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein
           precursor
          Length = 699

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 31  LCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 171
           LCG CS C  C     C C     D E +G+ C  C    +C + P +
Sbjct: 626 LCGYCSFCNRCTECESCHC-----DEENMGEHCDQCQHCQFCYLCPLV 668

>sp|Q92800|EZH1_HUMAN Enhancer of zeste homolog 1 (ENX-2)
          Length = 747

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 34  CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 201
           C C + C T      CPCYL  ++ +   D C  CG S    C +  C    I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613

>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
           precursor
          Length = 852

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 22  QHGLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 171
           Q  LCG C+ C  C     C C     D +++G+ C  C    +C + P +
Sbjct: 776 QGSLCGYCTFCNRCTECEHCHC-----DEDSMGEHCDQCQHCQFCYLCPLV 821

>sp|Q6L8G5|KR510_HUMAN Keratin-associated protein 5-10 (Keratin-associated protein 5.10)
           (Ultrahigh sulfur keratin-associated protein 5.10)
          Length = 202

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +1

Query: 28  GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPC 168
           G CGC   CG+        C   G      G  C  CG S C +P C
Sbjct: 2   GCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCG-SSCCVPVC 47

>sp|P70351|EZH1_MOUSE Enhancer of zeste homolog 1 (ENX-2)
          Length = 747

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 34  CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 201
           C C + C T      CPCYL  ++ +   D C  CG S    C +  C    I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613

>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 precursor (Notch 3)
            [Contains: Notch 3 extracellular truncation; Notch 3
            intracellular domain]
          Length = 2318

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
 Frame = +1

Query: 43   CSDCGTC---LLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKKVREKRGI 213
            C   GTC   +  Y+C C      A   GDSC    +  C   PC               
Sbjct: 1094 CQHGGTCRGYMGGYVCEC-----PAGYAGDSCE-DNIDECASQPCQ-------------- 1133

Query: 214  SGNFCYDLVASFCCPC 261
            +G  C DLVA + C C
Sbjct: 1134 NGGSCIDLVARYLCSC 1149

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,227,219
Number of Sequences: 369166
Number of extensions: 938142
Number of successful extensions: 2806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2779
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00508

  1. Dr_sW_013_G04
  2. Dr_sW_004_K12
  3. Dr_sW_026_K09