Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_K09
(576 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 67 2e-11
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 59 1e-08
sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Kerat... 34 0.23
sp|O27719|YG84_METTH Hypothetical protein MTH1684 32 1.5
sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich ... 31 2.5
sp|Q92800|EZH1_HUMAN Enhancer of zeste homolog 1 (ENX-2) 30 3.3
sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich ... 30 3.3
sp|Q6L8G5|KR510_HUMAN Keratin-associated protein 5-10 (Kera... 30 3.3
sp|P70351|EZH1_MOUSE Enhancer of zeste homolog 1 (ENX-2) 30 3.3
sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protei... 30 4.3
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 67.4 bits (163), Expect = 2e-11
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 10 AEWQHGLCGCCSDCGTCLLSYLC-PCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRK 186
+ WQ G+C C SDCG CL C PC +G A + C LCG S +R
Sbjct: 24 SNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTS---------VAMRT 72
Query: 187 KVREKRGISGNFCYDLVASFCCPCCAVAQTHQEV 288
R + GI G+ C D +A+ CCP C + Q +++
Sbjct: 73 LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDI 106
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 58.5 bits (140), Expect = 1e-08
Identities = 31/93 (33%), Positives = 43/93 (46%)
Frame = +1
Query: 10 AEWQHGLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKK 189
+ WQ LC C SDCG CL C L G A + C LCG + +R
Sbjct: 21 SNWQTSLCDCFSDCGVCLCGTFCFTCL-GCQVAADMNECCLCGTT---------VAMRTL 70
Query: 190 VREKRGISGNFCYDLVASFCCPCCAVAQTHQEV 288
R + GI G+ C D + + CP C+V Q +++
Sbjct: 71 YRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDI 103
>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Keratin-associated protein 5.9)
(Ultrahigh sulfur keratin-associated protein 5.9)
(Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
Length = 169
Score = 34.3 bits (77), Expect = 0.23
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Frame = +1
Query: 25 GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSC----FLCGLSYCIIPPCIGALIRKKV 192
G CGC CG+ C G G SC + C C +P C + K+
Sbjct: 2 GCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCGKRG 61
Query: 193 REKRGISGNFCYDL---VASFCCPCC 261
G S C S C PCC
Sbjct: 62 CGSCGGSKGGCGSCGCSQCSCCKPCC 87
>sp|O27719|YG84_METTH Hypothetical protein MTH1684
Length = 431
Score = 31.6 bits (70), Expect = 1.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 40 CSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGL 141
C+DC CL + CP + + + D CF CG+
Sbjct: 345 CTDCAVCLAARRCPTHAIDNGLDL--DRCFGCGV 376
>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 699
Score = 30.8 bits (68), Expect = 2.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 28 LCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 168
LCG CS C C C C D E +G+ C C +C + P +
Sbjct: 626 LCGYCSFCNRCTECESCHC-----DEENMGEHCDQCQHCQFCYLCPLV 668
>sp|Q92800|EZH1_HUMAN Enhancer of zeste homolog 1 (ENX-2)
Length = 747
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 31 CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 198
C C + C T CPCYL ++ + D C CG S C + C I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 852
Score = 30.4 bits (67), Expect = 3.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 19 QHGLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 168
Q LCG C+ C C C C D +++G+ C C +C + P +
Sbjct: 776 QGSLCGYCTFCNRCTECEHCHC-----DEDSMGEHCDQCQHCQFCYLCPLV 821
>sp|Q6L8G5|KR510_HUMAN Keratin-associated protein 5-10 (Keratin-associated protein 5.10)
(Ultrahigh sulfur keratin-associated protein 5.10)
Length = 202
Score = 30.4 bits (67), Expect = 3.3
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 25 GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPC 165
G CGC CG+ C G G C CG S C +P C
Sbjct: 2 GCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCG-SSCCVPVC 47
>sp|P70351|EZH1_MOUSE Enhancer of zeste homolog 1 (ENX-2)
Length = 747
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 31 CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 198
C C + C T CPCYL ++ + D C CG S C + C I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 precursor (Notch 3)
[Contains: Notch 3 extracellular truncation; Notch 3
intracellular domain]
Length = 2318
Score = 30.0 bits (66), Expect = 4.3
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = +1
Query: 40 CSDCGTC---LLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKKVREKRGI 210
C GTC + Y+C C A GDSC + C PC
Sbjct: 1094 CQHGGTCRGYMGGYVCEC-----PAGYAGDSCE-DNIDECASQPCQ-------------- 1133
Query: 211 SGNFCYDLVASFCCPC 258
+G C DLVA + C C
Sbjct: 1134 NGGSCIDLVARYLCSC 1149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,035,307
Number of Sequences: 369166
Number of extensions: 933178
Number of successful extensions: 2788
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)