Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_G04
(446 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 63 3e-10
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 54 2e-07
sp|O27719|YG84_METTH Hypothetical protein MTH1684 33 0.22
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 32 0.49
sp|P58397|ATS12_HUMAN ADAMTS-12 precursor (A disintegrin an... 32 0.64
sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich ... 31 1.4
sp|Q811B3|ATS12_MOUSE ADAMTS-12 precursor (A disintegrin an... 31 1.4
sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich ... 30 1.9
sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protei... 30 2.4
sp|P18751|ZO71_XENLA Oocyte zinc finger protein XLCOF7.1 30 2.4
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 62.8 bits (151), Expect = 3e-10
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 13 AEWQHGLCGRCSDCGTCLLSYLC-PCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRK 189
+ WQ G+C SDCG CL C PC +G A + C LCG S + R
Sbjct: 24 SNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVAM---------RT 72
Query: 190 KVREKRGISGNFCYDLVASFCCPCCAVAQTHQEV 291
R + GI G+ C D +A+ CCP C + Q +++
Sbjct: 73 LYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDI 106
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 53.9 bits (128), Expect = 2e-07
Identities = 30/93 (32%), Positives = 42/93 (45%)
Frame = +1
Query: 13 AEWQHGLCGRCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKK 192
+ WQ LC SDCG CL C L G A + C LCG + + R
Sbjct: 21 SNWQTSLCDCFSDCGVCLCGTFCFTCL-GCQVAADMNECCLCGTTVAM---------RTL 70
Query: 193 VREKRGISGNFCYDLVASFCCPCCAVAQTHQEV 291
R + GI G+ C D + + CP C+V Q +++
Sbjct: 71 YRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDI 103
>sp|O27719|YG84_METTH Hypothetical protein MTH1684
Length = 431
Score = 33.5 bits (75), Expect = 0.22
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 40 RCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGL 144
RC+DC CL + CP + + + D CF CG+
Sbjct: 344 RCTDCAVCLAARRCPTHAIDNGLDL--DRCFGCGV 376
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 32.3 bits (72), Expect = 0.49
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 37 GRCSDCGTCLLSYLCPCY----LVGKDAEAVGDSCFLCGLSYCIIPPC 168
GR S CG+ LSY C C K+ +G+ C+ CG S I C
Sbjct: 33 GRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDC 80
>sp|P58397|ATS12_HUMAN ADAMTS-12 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12)
Length = 1593
Score = 32.0 bits (71), Expect = 0.64
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 76 NMITNMFHNQNSGRIIHVAILPLII 2
NM+T +FHN + G IH+ ++ LI+
Sbjct: 276 NMVTGLFHNPSIGNAIHIVVVRLIL 300
>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 699
Score = 30.8 bits (68), Expect = 1.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 31 LCGRCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 171
LCG CS C C C C D E +G+ C C +C + P +
Sbjct: 626 LCGYCSFCNRCTECESCHC-----DEENMGEHCDQCQHCQFCYLCPLV 668
>sp|Q811B3|ATS12_MOUSE ADAMTS-12 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12)
Length = 1600
Score = 30.8 bits (68), Expect = 1.4
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -2
Query: 76 NMITNMFHNQNSGRIIHVAILPLII 2
NM+T +FH+ + G ++H+ ++ LI+
Sbjct: 280 NMVTGLFHSPSIGNLVHIVVVRLIL 304
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 852
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 22 QHGLCGRCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 171
Q LCG C+ C C C C D +++G+ C C +C + P +
Sbjct: 776 QGSLCGYCTFCNRCTECEHCHC-----DEDSMGEHCDQCQHCQFCYLCPLV 821
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 precursor (Notch 3)
[Contains: Notch 3 extracellular truncation; Notch 3
intracellular domain]
Length = 2318
Score = 30.0 bits (66), Expect = 2.4
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = +1
Query: 43 CSDCGTC---LLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKKVREKRGI 213
C GTC + Y+C C A GDSC + C PC
Sbjct: 1094 CQHGGTCRGYMGGYVCEC-----PAGYAGDSCE-DNIDECASQPCQ-------------- 1133
Query: 214 SGNFCYDLVASFCCPC 261
+G C DLVA + C C
Sbjct: 1134 NGGSCIDLVARYLCSC 1149
>sp|P18751|ZO71_XENLA Oocyte zinc finger protein XLCOF7.1
Length = 898
Score = 30.0 bits (66), Expect = 2.4
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 43 CSDCGTCLLSYLCPCYLVGKDAEAVGD---SCFLCGLSYCII 159
CS+CG C L+ LCP D G SC CG + +
Sbjct: 319 CSECGKCFLNQLCP------DRHQTGKKPFSCSKCGKCFAFL 354
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,522,972
Number of Sequences: 369166
Number of extensions: 860335
Number of successful extensions: 2537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2514
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)