Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K12
(436 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 62 7e-10
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 53 3e-07
sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Kerat... 34 0.12
sp|O27719|YG84_METTH Hypothetical protein MTH1684 32 0.76
sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich ... 31 1.3
sp|Q92800|EZH1_HUMAN Enhancer of zeste homolog 1 (ENX-2) 30 1.7
sp|Q6L8G5|KR510_HUMAN Keratin-associated protein 5-10 (Kera... 30 1.7
sp|P70351|EZH1_MOUSE Enhancer of zeste homolog 1 (ENX-2) 30 1.7
sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protei... 30 2.2
sp|P18751|ZO71_XENLA Oocyte zinc finger protein XLCOF7.1 30 2.2
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 61.6 bits (148), Expect = 7e-10
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +1
Query: 4 GLCGCCSDCGTCLLSYLC-PCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKKVREK 180
G+C C SDCG CL C PC +G A + C LCG S + R R +
Sbjct: 29 GMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVAM---------RTLYRTR 77
Query: 181 RGISGNFCYDLVASFCCPCCAVAQTHQEV 267
GI G+ C D +A+ CCP C + Q +++
Sbjct: 78 YGIPGSICDDYMATLCCPHCTLCQIKRDI 106
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 52.8 bits (125), Expect = 3e-07
Identities = 29/87 (33%), Positives = 40/87 (45%)
Frame = +1
Query: 7 LCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKKVREKRG 186
LC C SDCG CL C L G A + C LCG + + R R + G
Sbjct: 27 LCDCFSDCGVCLCGTFCFTCL-GCQVAADMNECCLCGTTVAM---------RTLYRTRYG 76
Query: 187 ISGNFCYDLVASFCCPCCAVAQTHQEV 267
I G+ C D + + CP C+V Q +++
Sbjct: 77 IPGSICDDYMVTLFCPVCSVCQLKRDI 103
>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Keratin-associated protein 5.9)
(Ultrahigh sulfur keratin-associated protein 5.9)
(Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
Length = 169
Score = 34.3 bits (77), Expect = 0.12
Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Frame = +1
Query: 4 GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSC----FLCGLSYCIIPPCIGALIRKKV 171
G CGC CG+ C G G SC + C C +P C + K+
Sbjct: 2 GCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGPSCCAPVYCCKPVCCCVPACSCSSCGKRG 61
Query: 172 REKRGISGNFCYDL---VASFCCPCC 240
G S C S C PCC
Sbjct: 62 CGSCGGSKGGCGSCGCSQCSCCKPCC 87
>sp|O27719|YG84_METTH Hypothetical protein MTH1684
Length = 431
Score = 31.6 bits (70), Expect = 0.76
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 19 CSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGL 120
C+DC CL + CP + + + D CF CG+
Sbjct: 345 CTDCAVCLAARRCPTHAIDNGLDL--DRCFGCGV 376
>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 699
Score = 30.8 bits (68), Expect = 1.3
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 7 LCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 147
LCG CS C C C C D E +G+ C C +C + P +
Sbjct: 626 LCGYCSFCNRCTECESCHC-----DEENMGEHCDQCQHCQFCYLCPLV 668
>sp|Q92800|EZH1_HUMAN Enhancer of zeste homolog 1 (ENX-2)
Length = 747
Score = 30.4 bits (67), Expect = 1.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 10 CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 177
C C + C T CPCYL ++ + D C CG S C + C I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613
>sp|Q6L8G5|KR510_HUMAN Keratin-associated protein 5-10 (Keratin-associated protein 5.10)
(Ultrahigh sulfur keratin-associated protein 5.10)
Length = 202
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 4 GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPC 144
G CGC CG+ C G G C CG S C +P C
Sbjct: 2 GCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCG-SSCCVPVC 47
>sp|P70351|EZH1_MOUSE Enhancer of zeste homolog 1 (ENX-2)
Length = 747
Score = 30.4 bits (67), Expect = 1.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 10 CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 177
C C + C T CPCYL ++ + D C CG S C + C I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 precursor (Notch 3)
[Contains: Notch 3 extracellular truncation; Notch 3
intracellular domain]
Length = 2318
Score = 30.0 bits (66), Expect = 2.2
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = +1
Query: 19 CSDCGTC---LLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKKVREKRGI 189
C GTC + Y+C C A GDSC + C PC
Sbjct: 1094 CQHGGTCRGYMGGYVCEC-----PAGYAGDSCE-DNIDECASQPCQ-------------- 1133
Query: 190 SGNFCYDLVASFCCPC 237
+G C DLVA + C C
Sbjct: 1134 NGGSCIDLVARYLCSC 1149
>sp|P18751|ZO71_XENLA Oocyte zinc finger protein XLCOF7.1
Length = 898
Score = 30.0 bits (66), Expect = 2.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 19 CSDCGTCLLSYLCPCYLVGKDAEAVGD---SCFLCGLSYCII 135
CS+CG C L+ LCP D G SC CG + +
Sbjct: 319 CSECGKCFLNQLCP------DRHQTGKKPFSCSKCGKCFAFL 354
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,246,162
Number of Sequences: 369166
Number of extensions: 810083
Number of successful extensions: 2417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2392
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)