Planaria EST Database

DrC_00484

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00484
         (638 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21406|VP4_SBMV  P4 protein                                     32   1.1  
sp|P23637|ERF2_PICPI  Eukaryotic peptide chain release facto...    31   3.1  
sp|P41658|LEF5_NPVAC  Late expression factor 5                     30   5.2  
sp|P31111|ZIP1_YEAST  Synaptonemal complex protein ZIP1            29   8.9  

>sp|P21406|VP4_SBMV P4 protein
          Length = 185

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 292 CMQVVGDLLHVCSWWMWAVRENTIHGDWGNQNMHNYN-SYRCYNTNPNIYCYNNMILS 122
           C+ VV  LL  C    WA  + + HG  G  ++  ++ S+ C  T+P  YC +  +LS
Sbjct: 48  CIPVVDVLLGAC----WAWPQPSRHGGLGLDDIDPFDASFSCCVTSPERYCLSRSVLS 101

>sp|P23637|ERF2_PICPI Eukaryotic peptide chain release factor GTP-binding subunit (ERF2)
           (Translation release factor 3) (ERF3) (ERF-3)
           (Omnipotent suppressor protein 2)
          Length = 741

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 217 GDWGNQNMHNYNSYRCYNTNPNIYCYNNMILSHRLHNQQIGHRRFCNFYSQ 65
           G + N N   Y++Y  YNTN N   Y+N   ++  +N    +  + N Y+Q
Sbjct: 90  GGYNNSNRGGYSNYNSYNTNSNQGGYSN-YNNNYANNSYNNNNNYNNNYNQ 139

>sp|P41658|LEF5_NPVAC Late expression factor 5
          Length = 265

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 558 NQSSIILSPPNRHGAASCAREQLLEHMQ----SVLYICSSAKKKIIK 430
           N  S++L    +H +  C R++ ++H Q     V+Y+ +S K K+ +
Sbjct: 178 NYKSLLLKKKEKHTSTGCTRKKKIKHRQILNDKVIYLQNSNKNKLFE 224

>sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1
          Length = 875

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 576 HQYTVNNQSSIILSPPNRHGAASCAREQLLEHMQSVLYICSSAKKKIIKEQNRN 415
           H+YT+ N  + + +  N    +S   + LLE   +   ICS+ K+++ K+Q  N
Sbjct: 154 HEYTMTNGKAPLHTSINNSSTSS--NDVLLEAFTNTQRICSNLKQELQKQQQDN 205

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,538,625
Number of Sequences: 369166
Number of extensions: 1374993
Number of successful extensions: 3902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3897
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00484

  1. Dr_sW_012_N24
  2. Dr_sW_002_D07
  3. Dr_sW_003_D18
  4. Dr_sW_006_K02