Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_N24
(638 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21406|VP4_SBMV P4 protein 32 1.1
sp|P23637|ERF2_PICPI Eukaryotic peptide chain release facto... 31 3.1
sp|P41658|LEF5_NPVAC Late expression factor 5 30 5.2
sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1 29 8.9
>sp|P21406|VP4_SBMV P4 protein
Length = 185
Score = 32.3 bits (72), Expect = 1.1
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 292 CMQVVGDLLHVCSWWMWAVRENTIHGDWGNQNMHNYN-SYRCYNTNPNIYCYNNMILS 122
C+ VV LL C WA + + HG G ++ ++ S+ C T+P YC + +LS
Sbjct: 48 CIPVVDVLLGAC----WAWPQPSRHGGLGLDDIDPFDASFSCCVTSPERYCLSRSVLS 101
>sp|P23637|ERF2_PICPI Eukaryotic peptide chain release factor GTP-binding subunit (ERF2)
(Translation release factor 3) (ERF3) (ERF-3)
(Omnipotent suppressor protein 2)
Length = 741
Score = 30.8 bits (68), Expect = 3.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 217 GDWGNQNMHNYNSYRCYNTNPNIYCYNNMILSHRLHNQQIGHRRFCNFYSQ 65
G + N N Y++Y YNTN N Y+N ++ +N + + N Y+Q
Sbjct: 90 GGYNNSNRGGYSNYNSYNTNSNQGGYSN-YNNNYANNSYNNNNNYNNNYNQ 139
>sp|P41658|LEF5_NPVAC Late expression factor 5
Length = 265
Score = 30.0 bits (66), Expect = 5.2
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -3
Query: 558 NQSSIILSPPNRHGAASCAREQLLEHMQ----SVLYICSSAKKKIIK 430
N S++L +H + C R++ ++H Q V+Y+ +S K K+ +
Sbjct: 178 NYKSLLLKKKEKHTSTGCTRKKKIKHRQILNDKVIYLQNSNKNKLFE 224
>sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1
Length = 875
Score = 29.3 bits (64), Expect = 8.9
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -3
Query: 576 HQYTVNNQSSIILSPPNRHGAASCAREQLLEHMQSVLYICSSAKKKIIKEQNRN 415
H+YT+ N + + + N +S + LLE + ICS+ K+++ K+Q N
Sbjct: 154 HEYTMTNGKAPLHTSINNSSTSS--NDVLLEAFTNTQRICSNLKQELQKQQQDN 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,538,625
Number of Sequences: 369166
Number of extensions: 1374993
Number of successful extensions: 3902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3897
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)