Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_K02
(507 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41658|LEF5_NPVAC Late expression factor 5 30 3.2
sp|P23637|ERF2_PICPI Eukaryotic peptide chain release facto... 30 4.2
sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1 29 5.5
sp|Q5CZK3|INSL3_PANTR Insulin-like 3 precursor (Leydig insu... 28 9.4
>sp|P41658|LEF5_NPVAC Late expression factor 5
Length = 265
Score = 30.0 bits (66), Expect = 3.2
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -3
Query: 427 NQSSIILSPPNRHGAASCAREQLLEHMQ----SVLYICSSAKKKIIK 299
N S++L +H + C R++ ++H Q V+Y+ +S K K+ +
Sbjct: 178 NYKSLLLKKKEKHTSTGCTRKKKIKHRQILNDKVIYLQNSNKNKLFE 224
>sp|P23637|ERF2_PICPI Eukaryotic peptide chain release factor GTP-binding subunit (ERF2)
(Translation release factor 3) (ERF3) (ERF-3)
(Omnipotent suppressor protein 2)
Length = 741
Score = 29.6 bits (65), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 86 GDWGNQNTHNYNSYRCYNTNPNIYCYNN 3
G + N N Y++Y YNTN N Y+N
Sbjct: 90 GGYNNSNRGGYSNYNSYNTNSNQGGYSN 117
>sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1
Length = 875
Score = 29.3 bits (64), Expect = 5.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -3
Query: 445 HQYTVNNQSSIILSPPNRHGAASCAREQLLEHMQSVLYICSSAKKKIIKEQNRN 284
H+YT+ N + + + N +S + LLE + ICS+ K+++ K+Q N
Sbjct: 154 HEYTMTNGKAPLHTSINNSSTSS--NDVLLEAFTNTQRICSNLKQELQKQQQDN 205
>sp|Q5CZK3|INSL3_PANTR Insulin-like 3 precursor (Leydig insulin-like peptide) (Ley-I-L)
(Relaxin-like factor) [Contains: Insulin-like 3 B chain;
Insulin-like 3 A chain]
Length = 131
Score = 28.5 bits (62), Expect = 9.4
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 13/50 (26%)
Frame = -2
Query: 122 WWMWAVRENTIHGDWGNQN-------------THNYNSYRCYNTNPNIYC 12
W W R + +HG N N +H++ +R TNP YC
Sbjct: 66 WLQWLERRHLLHGLVANSNLTLGPGLQPLPQTSHHHRHHRAAATNPARYC 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,251,697
Number of Sequences: 369166
Number of extensions: 1175340
Number of successful extensions: 3121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3118
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)