Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D18
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41658|LEF5_NPVAC Late expression factor 5 30 1.9
sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1 29 3.2
sp|P31264|HMPB_DROME Homeotic proboscipedia protein 28 9.3
sp|Q9ULI0|YC40_HUMAN Hypothetical protein KIAA1240 28 9.3
>sp|P41658|LEF5_NPVAC Late expression factor 5
Length = 265
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -1
Query: 336 NQSSIILSPPNRHGAASCAREQLLEHMQ----SVLYICSSAKKKIIK 208
N S++L +H + C R++ ++H Q V+Y+ +S K K+ +
Sbjct: 178 NYKSLLLKKKEKHTSTGCTRKKKIKHRQILNDKVIYLQNSNKNKLFE 224
>sp|P31111|ZIP1_YEAST Synaptonemal complex protein ZIP1
Length = 875
Score = 29.3 bits (64), Expect = 3.2
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -1
Query: 354 HQYTVNNQSSIILSPPNRHGAASCAREQLLEHMQSVLYICSSAKKKIIKEQNRN 193
H+YT+ N + + + N +S + LLE + ICS+ K+++ K+Q N
Sbjct: 154 HEYTMTNGKAPLHTSINNSSTSS--NDVLLEAFTNTQRICSNLKQELQKQQQDN 205
>sp|P31264|HMPB_DROME Homeotic proboscipedia protein
Length = 782
Score = 27.7 bits (60), Expect = 9.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 362 FRDTNTLLIINHQ*YYHHQIGMEQRVAHANNYL 264
+ DTN +NHQ +HH Q+ H N++
Sbjct: 550 YNDTNGTPYLNHQQQHHHHAQHHQQQQHHQNHV 582
>sp|Q9ULI0|YC40_HUMAN Hypothetical protein KIAA1240
Length = 733
Score = 27.7 bits (60), Expect = 9.3
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -1
Query: 351 QYTVNNQSSIILSPPNRHGAASCAREQLLEHMQSVLYICSSAKKKIIKEQNRNYL 187
Q + NQ+S ++PP R AA CA E L + S S ++K +++Q N L
Sbjct: 188 QELILNQAS--MAPPRRKHAALCAMEVLPLALPSPPRQLSESEKSRMEDQEENTL 240
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,939,513
Number of Sequences: 369166
Number of extensions: 968802
Number of successful extensions: 2335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)