Planaria EST Database

DrC_00441

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00441
         (690 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20232|TFS2_DROME  Transcription elongation factor S-II (...   186   5e-47
sp|P52652|TFS2_CAEEL  Putative transcription elongation fact...   174   3e-43
sp|Q15560|TCEA2_HUMAN  Transcription elongation factor A pro...   172   7e-43
sp|Q4KLL0|TCEA1_RAT  Transcription elongation factor A prote...   170   3e-42
sp|P10711|TCEA1_MOUSE  Transcription elongation factor A pro...   170   3e-42
sp|P23193|TCEA1_HUMAN  Transcription elongation factor A pro...   170   4e-42
sp|Q9QVN7|TCEA2_MOUSE  Transcription elongation factor A pro...   166   4e-41
sp|Q63799|TCEA2_RAT  Transcription elongation factor A prote...   166   5e-41
sp|P23881|TCEA3_MOUSE  Transcription elongation factor A pro...   157   3e-38
sp|O75764|TCEA3_HUMAN  Transcription elongation factor A pro...   153   4e-37

>sp|P20232|TFS2_DROME Transcription elongation factor S-II (RNA polymerase II elongation
           factor DMS-II) (TFIIS)
          Length = 313

 Score =  186 bits (472), Expect = 5e-47
 Identities = 86/164 (52%), Positives = 121/164 (73%)
 Frame = +3

Query: 6   TDPFRIKARVMISQALESGHVPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTRVMN 185
           TD  RIK R M++ AL+ G VPEG  + E ++ ++E AI++ F N+   YK R+R+RV N
Sbjct: 150 TDAVRIKCREMLATALKIGEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYKNRIRSRVAN 209

Query: 186 LRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGGGTE 365
           L+D  N  LR N + G V+A++LA M+ E+MAS EMK++R+K++ E I+++QL    GT+
Sbjct: 210 LKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGTK 269

Query: 366 TDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           TDL+KC KC++  C+YNQ+QTRSADEPMTTF  CN CG+RWKFC
Sbjct: 270 TDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313

>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II (TFIIS)
          Length = 308

 Score =  174 bits (440), Expect = 3e-43
 Identities = 81/163 (49%), Positives = 113/163 (69%)
 Frame = +3

Query: 9   DPFRIKARVMISQALESGHVPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTRVMNL 188
           D  R+K+  ++  AL  G +P+G+ D E L+VQIE  +++V  ++  +Y   VR+R+ NL
Sbjct: 146 DETRLKSAQLLLSALRFGDMPQGTLDPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNL 205

Query: 189 RDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGGGTET 368
           RD+ N+ LR NVL G V AEK A M+SE+MAS E++EMR K+  E I E Q+ +  GT +
Sbjct: 206 RDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILEHQMSVQQGTPS 265

Query: 369 DLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           D+ KC KC +  C+Y Q+QTRS+DEPMTTF FC  CG+RWKFC
Sbjct: 266 DMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC 308

>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 (Transcription
           elongation factor S-II protein 2) (Testis-specific S-II)
           (Transcription elongation factor TFIIS.l)
          Length = 299

 Score =  172 bits (436), Expect = 7e-43
 Identities = 87/167 (52%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALESGH--VPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTR 176
           T D  R K R M++ AL++ H  V  G+ D E LS QIE  IF    N+   YK RVR+R
Sbjct: 134 TCDAVRNKCREMLTAALQTDHDHVAIGA-DCERLSAQIEECIFRDVGNTDMKYKNRVRSR 192

Query: 177 VMNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGG 356
           + NL+D  N +LR NVL G ++ +++A+M+SE+MAS E+KE+RK    E I E Q+   G
Sbjct: 193 ISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTG 252

Query: 357 GTETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           GT+TDL  C KCR+  C+Y QVQTRS+DEPMTTF  CN CG+RWKFC
Sbjct: 253 GTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299

>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 (Transcription
           elongation factor S-II protein 1)
          Length = 301

 Score =  170 bits (431), Expect = 3e-42
 Identities = 86/167 (51%), Positives = 110/167 (65%), Gaps = 2/167 (1%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALESG--HVPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTR 176
           T+D  R+K R M++ AL +G  +V  G+ D E L  QIE AI+    N+   YK RVR+R
Sbjct: 136 TSDSVRLKCREMLAAALRTGDDYVAIGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 194

Query: 177 VMNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGG 356
           + NL+D  N  LR NVL G +  +  A M++E+MAS E+KEMRK    E I E Q+   G
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 254

Query: 357 GTETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           GT+TDL  C KC++  C+Y QVQTRSADEPMTTF  CN CG+RWKFC
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301

>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 (Transcription
           elongation factor S-II protein 1) (Transcription
           elongation factor TFIIS.o)
          Length = 301

 Score =  170 bits (431), Expect = 3e-42
 Identities = 86/167 (51%), Positives = 110/167 (65%), Gaps = 2/167 (1%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALESG--HVPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTR 176
           T+D  R+K R M++ AL +G  +V  G+ D E L  QIE AI+    N+   YK RVR+R
Sbjct: 136 TSDSVRLKCREMLAAALRTGDDYVAIGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 194

Query: 177 VMNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGG 356
           + NL+D  N  LR NVL G +  +  A M++E+MAS E+KEMRK    E I E Q+   G
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 254

Query: 357 GTETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           GT+TDL  C KC++  C+Y QVQTRSADEPMTTF  CN CG+RWKFC
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301

>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 (Transcription
           elongation factor S-II protein 1) (Transcription
           elongation factor TFIIS.o)
          Length = 301

 Score =  170 bits (430), Expect = 4e-42
 Identities = 85/167 (50%), Positives = 110/167 (65%), Gaps = 2/167 (1%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALESG--HVPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTR 176
           T+D  R+K R M++ AL +G  ++  G+ D E L  QIE AI+    N+   YK RVR+R
Sbjct: 136 TSDSVRLKCREMLAAALRTGDDYIAIGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 194

Query: 177 VMNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGG 356
           + NL+D  N  LR NVL G +  +  A M++E+MAS E+KEMRK    E I E Q+   G
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 254

Query: 357 GTETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           GT+TDL  C KC++  C+Y QVQTRSADEPMTTF  CN CG+RWKFC
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301

>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 (Transcription
           elongation factor S-II protein 2) (Testis-specific S-II)
           (Protein S-II-T1) (Transcription elongation factor
           TFIIS.l)
          Length = 299

 Score =  166 bits (421), Expect = 4e-41
 Identities = 85/167 (50%), Positives = 112/167 (67%), Gaps = 2/167 (1%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALESGH--VPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTR 176
           T D  R K R M++ AL++ H  V  G  + E+LS QIE  IF    N+   YK RVR+R
Sbjct: 134 TCDAVRNKCREMLTLALQTDHDHVAVG-VNCEHLSSQIEECIFLDVGNTDMKYKNRVRSR 192

Query: 177 VMNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGG 356
           + NL+D  N  LR NVL G ++ +++A+M+SE+MAS E+KE+RK    E I E Q+   G
Sbjct: 193 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTG 252

Query: 357 GTETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           GT+TDL  C KCR+  C+Y QVQTRS+DEPMTT+  CN CG+RWKFC
Sbjct: 253 GTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299

>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 (Transcription
           elongation factor S-II protein 2) (Testis-specific S-II)
           (Protein S-II-T1) (Transcription elongation factor
           TFIIS.l)
          Length = 299

 Score =  166 bits (420), Expect = 5e-41
 Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALESGH--VPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTR 176
           T D  R K R M++ AL++ H  V  G    E+LS QIE  IF    N+   YK RVR+R
Sbjct: 134 TCDAVRNKCREMLTLALQTDHDHVAVG-VSCEHLSSQIEECIFLDVGNTDMKYKNRVRSR 192

Query: 177 VMNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGG 356
           + NL+D  N  LR NVL G ++ +++A+M+SE+MAS E+KE+RK    E I E Q+   G
Sbjct: 193 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTG 252

Query: 357 GTETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           GT+TDL  C KCR+  C+Y QVQTRS+DEPMTT+  CN CG+RWKFC
Sbjct: 253 GTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299

>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 (Transcription
           elongation factor S-II protein 3) (Transcription
           elongation factor TFIIS.h)
          Length = 347

 Score =  157 bits (396), Expect = 3e-38
 Identities = 77/166 (46%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALES-GHVPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTRV 179
           T D  R K   M+S AL++  +  +   + + L+ +IE  I+    ++   Y+ RVR+R+
Sbjct: 182 TGDSVRDKCVEMLSAALKAEDNFKDYGVNCDKLASEIEDHIYQELKSTDMKYRNRVRSRI 241

Query: 180 MNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGGG 359
            NL+D  N  LR NVL+G +S E +A M++E+MAS E++E+R     E I E Q+   GG
Sbjct: 242 SNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 301

Query: 360 TETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           T TDL++C KC++  C+YNQVQTRSADEPMTTF  CN CG+RWKFC
Sbjct: 302 TTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 347

>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 (Transcription
           elongation factor S-II protein 3) (Transcription
           elongation factor TFIIS.h)
          Length = 348

 Score =  153 bits (387), Expect = 4e-37
 Identities = 76/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
 Frame = +3

Query: 3   TTDPFRIKARVMISQALESGH-VPEGSYDTEYLSVQIESAIFNVFMNSGPTYKQRVRTRV 179
           T D  R K   M+S AL++     +   + + ++ +IE  I+    ++   Y+ RVR+R+
Sbjct: 183 TGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 242

Query: 180 MNLRDQNNVELRLNVLAGTVSAEKLALMSSEDMASKEMKEMRKKYMGEVIHESQLCIGGG 359
            NL+D  N  LR NVL+G +SA  +A M++E+MAS E++E+R     E I E Q+   GG
Sbjct: 243 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 302

Query: 360 TETDLIKCPKCRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 497
           T TDL +C KC++  C+YNQVQTRSADEPMTTF  CN CG+RWKFC
Sbjct: 303 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,796,974
Number of Sequences: 369166
Number of extensions: 1754906
Number of successful extensions: 5433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5427
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00441

  1. Dr_sW_011_J19
  2. Dr_sW_022_N17
  3. Dr_sW_016_G13
  4. Dr_sW_015_D08