Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_D08
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75764|TCEA3_HUMAN Transcription elongation factor A pro... 71 7e-13
sp|P23881|TCEA3_MOUSE Transcription elongation factor A pro... 71 7e-13
sp|P20232|TFS2_DROME Transcription elongation factor S-II (... 70 2e-12
sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A prote... 69 4e-12
sp|P23193|TCEA1_HUMAN Transcription elongation factor A pro... 69 4e-12
sp|Q15560|TCEA2_HUMAN Transcription elongation factor A pro... 69 4e-12
sp|P10711|TCEA1_MOUSE Transcription elongation factor A pro... 69 4e-12
sp|Q63799|TCEA2_RAT Transcription elongation factor A prote... 67 1e-11
sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A pro... 67 1e-11
sp|P52652|TFS2_CAEEL Putative transcription elongation fact... 64 1e-10
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 (Transcription
elongation factor S-II protein 3) (Transcription
elongation factor TFIIS.h)
Length = 348
Score = 71.2 bits (173), Expect = 7e-13
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
C++ C+YNQVQTRSADEPMTTF CN CG+RWKFC
Sbjct: 313 CKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 (Transcription
elongation factor S-II protein 3) (Transcription
elongation factor TFIIS.h)
Length = 347
Score = 71.2 bits (173), Expect = 7e-13
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
C++ C+YNQVQTRSADEPMTTF CN CG+RWKFC
Sbjct: 312 CKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 347
>sp|P20232|TFS2_DROME Transcription elongation factor S-II (RNA polymerase II elongation
factor DMS-II) (TFIIS)
Length = 313
Score = 69.7 bits (169), Expect = 2e-12
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
C++ C+YNQ+QTRSADEPMTTF CN CG+RWKFC
Sbjct: 278 CKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 (Transcription
elongation factor S-II protein 1)
Length = 301
Score = 68.6 bits (166), Expect = 4e-12
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
C++ C+Y QVQTRSADEPMTTF CN CG+RWKFC
Sbjct: 266 CKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 (Transcription
elongation factor S-II protein 1) (Transcription
elongation factor TFIIS.o)
Length = 301
Score = 68.6 bits (166), Expect = 4e-12
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
C++ C+Y QVQTRSADEPMTTF CN CG+RWKFC
Sbjct: 266 CKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 (Transcription
elongation factor S-II protein 2) (Testis-specific S-II)
(Transcription elongation factor TFIIS.l)
Length = 299
Score = 68.6 bits (166), Expect = 4e-12
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
CR+ C+Y QVQTRS+DEPMTTF CN CG+RWKFC
Sbjct: 264 CRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 (Transcription
elongation factor S-II protein 1) (Transcription
elongation factor TFIIS.o)
Length = 301
Score = 68.6 bits (166), Expect = 4e-12
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
C++ C+Y QVQTRSADEPMTTF CN CG+RWKFC
Sbjct: 266 CKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 (Transcription
elongation factor S-II protein 2) (Testis-specific S-II)
(Protein S-II-T1) (Transcription elongation factor
TFIIS.l)
Length = 299
Score = 67.4 bits (163), Expect = 1e-11
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
CR+ C+Y QVQTRS+DEPMTT+ CN CG+RWKFC
Sbjct: 264 CRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 (Transcription
elongation factor S-II protein 2) (Testis-specific S-II)
(Protein S-II-T1) (Transcription elongation factor
TFIIS.l)
Length = 299
Score = 67.4 bits (163), Expect = 1e-11
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
CR+ C+Y QVQTRS+DEPMTT+ CN CG+RWKFC
Sbjct: 264 CRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II (TFIIS)
Length = 308
Score = 63.9 bits (154), Expect = 1e-10
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +2
Query: 2 CRESRCSYNQVQTRSADEPMTTFAFCNSCGHRWKFC 109
C + C+Y Q+QTRS+DEPMTTF FC CG+RWKFC
Sbjct: 273 CGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC 308
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,000,165
Number of Sequences: 369166
Number of extensions: 591381
Number of successful extensions: 1655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)