Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N17
(410 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20232|TFS2_DROME Transcription elongation factor S-II (... 111 6e-25
sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A prote... 108 4e-24
sp|P23193|TCEA1_HUMAN Transcription elongation factor A pro... 108 4e-24
sp|P10711|TCEA1_MOUSE Transcription elongation factor A pro... 108 4e-24
sp|P23881|TCEA3_MOUSE Transcription elongation factor A pro... 107 7e-24
sp|O75764|TCEA3_HUMAN Transcription elongation factor A pro... 106 2e-23
sp|Q15560|TCEA2_HUMAN Transcription elongation factor A pro... 105 3e-23
sp|Q63799|TCEA2_RAT Transcription elongation factor A prote... 104 6e-23
sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A pro... 104 6e-23
sp|P52652|TFS2_CAEEL Putative transcription elongation fact... 99 3e-21
>sp|P20232|TFS2_DROME Transcription elongation factor S-II (RNA polymerase II elongation
factor DMS-II) (TFIIS)
Length = 313
Score = 111 bits (277), Expect = 6e-25
Identities = 46/75 (61%), Positives = 62/75 (82%)
Frame = +2
Query: 38 DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSADEPMT 217
+MAS EMK++R+K++ E I+++QL GT+TDL+KC KC++ C+YNQ+QTRSADEPMT
Sbjct: 239 EMASDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMT 298
Query: 218 TFAFCNSCGHRWKFC 262
TF CN CG+RWKFC
Sbjct: 299 TFVMCNECGNRWKFC 313
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 (Transcription
elongation factor S-II protein 1)
Length = 301
Score = 108 bits (270), Expect = 4e-24
Identities = 48/79 (60%), Positives = 57/79 (72%)
Frame = +2
Query: 26 LVA*DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSAD 205
+ A +MAS E+KEMRK E I E Q+ GGT+TDL C KC++ C+Y QVQTRSAD
Sbjct: 223 MTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSAD 282
Query: 206 EPMTTFAFCNSCGHRWKFC 262
EPMTTF CN CG+RWKFC
Sbjct: 283 EPMTTFVVCNECGNRWKFC 301
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 (Transcription
elongation factor S-II protein 1) (Transcription
elongation factor TFIIS.o)
Length = 301
Score = 108 bits (270), Expect = 4e-24
Identities = 48/79 (60%), Positives = 57/79 (72%)
Frame = +2
Query: 26 LVA*DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSAD 205
+ A +MAS E+KEMRK E I E Q+ GGT+TDL C KC++ C+Y QVQTRSAD
Sbjct: 223 MTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSAD 282
Query: 206 EPMTTFAFCNSCGHRWKFC 262
EPMTTF CN CG+RWKFC
Sbjct: 283 EPMTTFVVCNECGNRWKFC 301
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 (Transcription
elongation factor S-II protein 1) (Transcription
elongation factor TFIIS.o)
Length = 301
Score = 108 bits (270), Expect = 4e-24
Identities = 48/79 (60%), Positives = 57/79 (72%)
Frame = +2
Query: 26 LVA*DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSAD 205
+ A +MAS E+KEMRK E I E Q+ GGT+TDL C KC++ C+Y QVQTRSAD
Sbjct: 223 MTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSAD 282
Query: 206 EPMTTFAFCNSCGHRWKFC 262
EPMTTF CN CG+RWKFC
Sbjct: 283 EPMTTFVVCNECGNRWKFC 301
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 (Transcription
elongation factor S-II protein 3) (Transcription
elongation factor TFIIS.h)
Length = 347
Score = 107 bits (268), Expect = 7e-24
Identities = 46/79 (58%), Positives = 58/79 (73%)
Frame = +2
Query: 26 LVA*DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSAD 205
+ A +MAS E++E+R E I E Q+ GGT TDL++C KC++ C+YNQVQTRSAD
Sbjct: 269 MTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSAD 328
Query: 206 EPMTTFAFCNSCGHRWKFC 262
EPMTTF CN CG+RWKFC
Sbjct: 329 EPMTTFVLCNECGNRWKFC 347
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 (Transcription
elongation factor S-II protein 3) (Transcription
elongation factor TFIIS.h)
Length = 348
Score = 106 bits (265), Expect = 2e-23
Identities = 46/79 (58%), Positives = 57/79 (72%)
Frame = +2
Query: 26 LVA*DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSAD 205
+ A +MAS E++E+R E I E Q+ GGT TDL +C KC++ C+YNQVQTRSAD
Sbjct: 270 MTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSAD 329
Query: 206 EPMTTFAFCNSCGHRWKFC 262
EPMTTF CN CG+RWKFC
Sbjct: 330 EPMTTFVLCNECGNRWKFC 348
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 (Transcription
elongation factor S-II protein 2) (Testis-specific S-II)
(Transcription elongation factor TFIIS.l)
Length = 299
Score = 105 bits (263), Expect = 3e-23
Identities = 46/75 (61%), Positives = 55/75 (73%)
Frame = +2
Query: 38 DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSADEPMT 217
+MAS E+KE+RK E I E Q+ GGT+TDL C KCR+ C+Y QVQTRS+DEPMT
Sbjct: 225 EMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMT 284
Query: 218 TFAFCNSCGHRWKFC 262
TF CN CG+RWKFC
Sbjct: 285 TFVVCNECGNRWKFC 299
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 (Transcription
elongation factor S-II protein 2) (Testis-specific S-II)
(Protein S-II-T1) (Transcription elongation factor
TFIIS.l)
Length = 299
Score = 104 bits (260), Expect = 6e-23
Identities = 45/75 (60%), Positives = 55/75 (73%)
Frame = +2
Query: 38 DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSADEPMT 217
+MAS E+KE+RK E I E Q+ GGT+TDL C KCR+ C+Y QVQTRS+DEPMT
Sbjct: 225 EMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMT 284
Query: 218 TFAFCNSCGHRWKFC 262
T+ CN CG+RWKFC
Sbjct: 285 TYVVCNECGNRWKFC 299
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 (Transcription
elongation factor S-II protein 2) (Testis-specific S-II)
(Protein S-II-T1) (Transcription elongation factor
TFIIS.l)
Length = 299
Score = 104 bits (260), Expect = 6e-23
Identities = 45/75 (60%), Positives = 55/75 (73%)
Frame = +2
Query: 38 DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSADEPMT 217
+MAS E+KE+RK E I E Q+ GGT+TDL C KCR+ C+Y QVQTRS+DEPMT
Sbjct: 225 EMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMT 284
Query: 218 TFAFCNSCGHRWKFC 262
T+ CN CG+RWKFC
Sbjct: 285 TYVVCNECGNRWKFC 299
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II (TFIIS)
Length = 308
Score = 99.4 bits (246), Expect = 3e-21
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +2
Query: 38 DMASKEMKEMRKKYMGEVIHESQLCIGGGTETDLIKCPKCRESRCSYNQVQTRSADEPMT 217
+MAS E++EMR K+ E I E Q+ + GT +D+ KC KC + C+Y Q+QTRS+DEPMT
Sbjct: 234 EMASAEIREMRDKFTKEAILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMT 293
Query: 218 TFAFCNSCGHRWKFC 262
TF FC CG+RWKFC
Sbjct: 294 TFVFCLECGNRWKFC 308
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,127,875
Number of Sequences: 369166
Number of extensions: 1035085
Number of successful extensions: 3393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3386
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)