Planaria EST Database


DrC_00418

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00418
         (800 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O55125|NIPS1_MOUSE  Protein NipSnap1                           165   2e-40
sp|Q9BPW8|NIPS1_HUMAN  Protein NipSnap1                           164   3e-40
sp|Q9PU58|NIPS2_BRARE  Protein NipSnap2                           163   4e-40
sp|O75323|NIPS2_HUMAN  Protein NipSnap2 (Glioblastoma amplif...   162   1e-39
sp|O55126|NIPS2_MOUSE  Protein NipSnap2 (Glioblastoma amplif...   156   5e-38
sp|Q9VXK0|NIPSN_DROME  Protein NipSnap                            155   9e-38
sp|P34492|YMQ1_CAEEL  Putative NipSnap protein K02D10.1           121   3e-27
sp|Q9UFN0|NPS3A_HUMAN  Protein NipSnap3A (NipSnap4) (Target ...    54   6e-07
sp|Q5RAA9|NPS3A_PONPY  Protein NipSnap3A                           54   6e-07
sp|Q9CQE1|NPS3B_MOUSE  Protein NipSnap3B                           51   4e-06
>sp|O55125|NIPS1_MOUSE Protein NipSnap1
          Length = 284

 Score =  165 bits (417), Expect = 2e-40
 Identities = 70/136 (51%), Positives = 103/136 (75%)
 Frame = +2

Query: 227 RFNSTPDFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIE 406
           +  +  ++ EFRK R++ML+ R+ Q+L  FS+W E +PR +  +I+ELR+Y LKPGTMIE
Sbjct: 141 KLKNNKEYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPR-AGPNIYELRTYKLKPGTMIE 199

Query: 407 WGNYWARGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDEC 586
           WGN WAR I+ R+++ E + G F+ +G++++VHH+WAYKDL+ R++ RN AWR  GWDE 
Sbjct: 200 WGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDEN 259

Query: 587 VLHTVPLIRHMNSNIL 634
           V +TVPL+RHM S I+
Sbjct: 260 VYYTVPLVRHMESRIM 275
>sp|Q9BPW8|NIPS1_HUMAN Protein NipSnap1
          Length = 284

 Score =  164 bits (415), Expect = 3e-40
 Identities = 69/136 (50%), Positives = 102/136 (75%)
 Frame = +2

Query: 227 RFNSTPDFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIE 406
           +  +  ++ EFR+ R++ML+ R+ Q+L  FS+W E +PR   + I+ELR+Y LKPGTMIE
Sbjct: 141 KLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPN-IYELRTYKLKPGTMIE 199

Query: 407 WGNYWARGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDEC 586
           WGN WAR I+ R+++ E + G F+ +G++++VHH+WAYKDL+ R++ RN AWR  GWDE 
Sbjct: 200 WGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDEN 259

Query: 587 VLHTVPLIRHMNSNIL 634
           V +TVPL+RHM S I+
Sbjct: 260 VYYTVPLVRHMESRIM 275
>sp|Q9PU58|NIPS2_BRARE Protein NipSnap2
          Length = 286

 Score =  163 bits (413), Expect = 4e-40
 Identities = 71/136 (52%), Positives = 98/136 (72%)
 Frame = +2

Query: 227 RFNSTPDFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIE 406
           +  +  +F E+R  R +ML+ R+ Q+L  FS+W E  PR   + I+ELRSY L+PGTMIE
Sbjct: 143 KLKNNKEFLEYRSERGKMLLSRRNQLLLEFSFWNEPVPRDGPN-IYELRSYQLRPGTMIE 201

Query: 407 WGNYWARGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDEC 586
           WGNYWAR I  R+ + E + G F+ +GD++MVHH+WAYKDL+ R+  RN AW++ GWDE 
Sbjct: 202 WGNYWARAIGYRQHNREAVGGFFSQIGDLYMVHHLWAYKDLQSREDTRNAAWQHEGWDEV 261

Query: 587 VLHTVPLIRHMNSNIL 634
           V +TVPLI+HM S I+
Sbjct: 262 VYYTVPLIQHMESRIM 277
>sp|O75323|NIPS2_HUMAN Protein NipSnap2 (Glioblastoma amplified sequence)
          Length = 286

 Score =  162 bits (410), Expect = 1e-39
 Identities = 72/136 (52%), Positives = 98/136 (72%)
 Frame = +2

Query: 227 RFNSTPDFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIE 406
           +     +F EFRK R++ML+ RK Q+L  FS+W E  PR S  +I+ELRSY L+PGTMIE
Sbjct: 143 KLRENKEFLEFRKARSDMLLSRKNQLLLEFSFWNEPVPR-SGPNIYELRSYQLRPGTMIE 201

Query: 407 WGNYWARGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDEC 586
           WGNYWAR IR R+  +E + G F+ +G ++MVHH+WAY+DL+ R+ +RN AW   GW+E 
Sbjct: 202 WGNYWARAIRFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEEL 261

Query: 587 VLHTVPLIRHMNSNIL 634
           V +TVPLI+ M S I+
Sbjct: 262 VYYTVPLIQEMESRIM 277
>sp|O55126|NIPS2_MOUSE Protein NipSnap2 (Glioblastoma amplified sequence)
          Length = 281

 Score =  156 bits (395), Expect = 5e-38
 Identities = 70/136 (51%), Positives = 95/136 (69%)
 Frame = +2

Query: 227 RFNSTPDFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIE 406
           +     +F  FRK R++ML+ RK Q+L  FS+W E  PR   + I+ELRSY L+PGTMIE
Sbjct: 138 KLKENQEFVNFRKARSDMLLSRKNQLLLEFSFWNEPVPRPGPN-IYELRSYQLRPGTMIE 196

Query: 407 WGNYWARGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDEC 586
           WGNYWAR IR R+  +E I G F+ +G ++MV H+WAY+DL+ R+ +RN AW   GW+E 
Sbjct: 197 WGNYWARAIRFRQDSNEAIGGFFSQIGQLYMVDHLWAYRDLQTREDIRNAAWHKHGWEEL 256

Query: 587 VLHTVPLIRHMNSNIL 634
           V +TVPLI+ M S I+
Sbjct: 257 VYYTVPLIQEMESRIM 272
>sp|Q9VXK0|NIPSN_DROME Protein NipSnap
          Length = 273

 Score =  155 bits (393), Expect = 9e-38
 Identities = 70/137 (51%), Positives = 93/137 (67%)
 Frame = +2

Query: 242 PDFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYW 421
           P++    + R++ L  R  Q L  FSYWP+I  R +  +I+E+RSY L PGTMIEWGN W
Sbjct: 135 PEYLSLMQERSKFLRSRHLQYLLAFSYWPQIASR-TGKNIYEMRSYRLTPGTMIEWGNNW 193

Query: 422 ARGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTV 601
           AR I  RK ++E  AG F+ +G ++ VHH+W YK L+ RK+ R  AWR+PGWDECV +TV
Sbjct: 194 ARAINYRKHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVAYTV 253

Query: 602 PLIRHMNSNILRATPFS 652
           PLIR M+  +L  T FS
Sbjct: 254 PLIREMHCRVLAPTEFS 270
>sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1
          Length = 526

 Score =  121 bits (303), Expect = 3e-27
 Identities = 53/121 (43%), Positives = 79/121 (65%)
 Frame = +2

Query: 290 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 469
           RK  I+  FSYW E + R  +  +++LRSY L+PGTMI+W + WA+GI+ R++ ++ + G
Sbjct: 404 RKNLIVKSFSYWREPEQRPPNH-VYDLRSYVLQPGTMIDWASAWAKGIQYRREANQDVGG 462

Query: 470 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPF 649
            F  VG +++V+H+WAY  +  R   R+  W  PGWD  V +TVPLI+ M S IL  T +
Sbjct: 463 FFAQVGQLYVVYHIWAYPSMSGRNDTRHATWAKPGWDATVANTVPLIKKMQSKILTPTKY 522

Query: 650 S 652
           S
Sbjct: 523 S 523
>sp|Q9UFN0|NPS3A_HUMAN Protein NipSnap3A (NipSnap4) (Target for Salmonella secreted
           protein C) (TassC)
          Length = 247

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +2

Query: 338 PRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFTHVGD-IHMVHHMW 514
           PRQ D   +E RSY LKP  M E+   + +   +R  HSE +       G  ++ V H+W
Sbjct: 29  PRQYDGIFYEFRSYYLKPSKMNEFLENFEKNAHLRTAHSELVGYWSVEFGGRMNTVFHIW 88

Query: 515 AYKDLEHRKKMRNEAWRNPGWDE-CVLHTVPLIRHMNSNILRATPF 649
            Y +  HR ++R    ++  W E  ++  + LI    S I    P+
Sbjct: 89  KYDNFAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPW 134

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +2

Query: 353 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 526
           + ++EL ++ +KPG    WG+ + R +   V   +++ +    T  G ++ VH +W  + 
Sbjct: 143 EGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNES 202

Query: 527 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 652
            + R   R+++  +P     V  +V  +    + +L  T FS
Sbjct: 203 ADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFS 244
>sp|Q5RAA9|NPS3A_PONPY Protein NipSnap3A
          Length = 247

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +2

Query: 338 PRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFTHVGD-IHMVHHMW 514
           PRQ D   +E RSY LKP  M E+   + +   +R  HSE +       G  ++ V H+W
Sbjct: 29  PRQYDGIFYEFRSYYLKPSKMNEFLENFKKNAHLRTAHSELVGYWSVEFGGRMNTVFHIW 88

Query: 515 AYKDLEHRKKMRNEAWRNPGWDE-CVLHTVPLIRHMNSNILRATPF 649
            Y +  HR ++R    ++  W E  ++  + LI    S I    P+
Sbjct: 89  KYDNFAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPW 134

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = +2

Query: 353 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 526
           + ++EL ++ +KPG    WG+ + R +   V   +++ +    T  G ++ VH +W  + 
Sbjct: 143 EGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNES 202

Query: 527 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 652
            + R   R+++  +P     V  +V  +    + +L  T FS
Sbjct: 203 ADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFS 244
>sp|Q9CQE1|NPS3B_MOUSE Protein NipSnap3B
          Length = 247

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 299 QILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFT 478
           Q+  PF+      PRQS+ + +E R+Y LKP    E+   +   + +R  HSE I G +T
Sbjct: 20  QVCSPFA----TGPRQSNGTFYEFRTYFLKPSKTNEFLENFKNSVHLRTAHSEMI-GYWT 74

Query: 479 --HVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDE 583
               G  + V H+W Y +  HR  +R    ++  W E
Sbjct: 75  VEFGGRTNRVFHIWKYDNFAHRTAVRKALAKDKEWQE 111

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = +2

Query: 353 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 526
           + ++EL ++ +KPG    WGN + R +   V   +S  +    T  G ++ VH +W  + 
Sbjct: 143 EGVYELATFQMKPGGPALWGNAFKRAVNAHVELGYSTLVGVFHTEYGALNRVHVLWWNES 202

Query: 527 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 652
            + R   R+ +  +P     V  +V  +    +  L  T FS
Sbjct: 203 ADSRAAGRHWSHEDPRVVAAVRESVSYLESQQNTFLIPTSFS 244
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,949,070
Number of Sequences: 369166
Number of extensions: 1767338
Number of successful extensions: 4655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4643
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00418

  1. Dr_sW_011_D06
  2. Dr_sW_019_L19
  3. Dr_sW_003_P14